MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-397P04
Chromosome	10 (Build37)
Map Location	7,710,946 - 7,711,288
singlet/doublet	singlet
Overlap gene	LOC100039046
Upstream gene	Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2
Downstream gene	Ust, Sash1, LOC100039173
Link	Open Mouse BAC browser

Click to get alignment info.

name	Iyd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70337 MGI:1917587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp1r14c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76142 MGI:1923392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666520 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666520 MGI:3647703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039303 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 175 ESTs, 5 Proteins

name	LOC670558 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC626333 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC666541 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	9230019H11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215728 MGI:3588256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041405 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041405
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC672213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Lrp11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237253 MGI:2442989
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcmt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18537 MGI:97502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nup43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69912 MGI:1917162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lats1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16798 MGI:1333883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 31 ESTs, 11 Proteins

name	Katna1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23924 MGI:1344353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC013529 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215751 MGI:2384905
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppil4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67418 MGI:1914668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665035 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins pseudo : _no_value

name	Zc3h12d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237256 MGI:3045313
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map3k7ip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68652 MGI:1915902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039046 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ust (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338362 MGI:2442406
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sash1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70097 MGI:1917347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039173 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039173
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs

name	Iyd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383992 GeneID:70337 MGI:1917587
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : iodotyrosine deiodinase transcript_id : NM_027391.2

name	Ppp1r14c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130995 GeneID:76142 MGI:1923392
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1, regulatory (inhibitor) subunit 14c transcript_id : NM_133485.2

name	EG666520 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94387906 GeneID:666520 MGI:3647703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666520 transcript_id : XM_984367.1

name	LOC100039303 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260610 GeneID:100039303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 175 ESTs, 5 Proteins product : similar to ribosomal protein L35a transcript_id : XM_001472599.1

name	LOC670558 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260619 GeneID:670558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to histocompatibility antigen 60 transcript_id : XM_001476279.1

name	Lrp11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129948 GeneID:237253 MGI:2442989
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : low density lipoprotein receptor-related protein 11 transcript_id : NM_172784.2

name	Pcmt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679216 GeneID:18537 MGI:97502
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 transcript_id : NM_008786.1

name	Nup43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21844544 GeneID:69912 MGI:1917162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleoporin 43 transcript_id : NM_145706.1

name	Lats1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94387911 GeneID:16798 MGI:1333883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 31 ESTs, 11 Proteins product : large tumor suppressor, transcript variant 1 transcript_id : XM_618738.3

name	Katna1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754409 GeneID:23924 MGI:1344353
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : katanin p60 (ATPase-containing) subunit A1 transcript_id : NM_011835.1

name	BC013529 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803030 GeneID:215751 MGI:2384905
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC013529 transcript_id : NM_145418.2

name	Ppil4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27532957 GeneID:67418 MGI:1914668
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidylprolyl isomerase (cyclophilin)-like 4 transcript_id : NM_026141.2

name	Zc3h12d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349143 GeneID:237256 MGI:3045313
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger CCCH type containing 12D transcript_id : NM_172785.2

name	Map3k7ip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892382 GeneID:68652 MGI:1915902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase kinase kinase 7 interacting protein 2 transcript_id : NM_138667.2

name	Ust (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110556630 GeneID:338362 MGI:2442406
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uronyl-2-sulfotransferase transcript_id : NM_177387.3

name	Sash1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112821669 GeneID:70097 MGI:1917347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAM and SH3 domain containing 1 transcript_id : NM_175155.4

name	LOC100039173 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260627 GeneID:100039173
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs product : similar to peritrophic matrix insect intestinal mucin transcript_id : XM_001472348.1

name	Iyd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312562 CCDS:CCDS23683.1 GeneID:70337 MGI:1917587
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : iodotyrosine dehalogenase 1 protein protein_id : NP_081667.1

name	Ppp1r14c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19311014 CCDS:CCDS23684.1 GeneID:76142 MGI:1923392
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO:0004865 - type 1 serine/threonine specific protein phosphatase inhibitor activity [Evidence IDA] GO_process : GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 product : PKC-potentiated PP1 inhibitory protein protein_id : NP_597844.1

name	EG666520 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94387907 GeneID:666520 MGI:3647703
definition	codon_start : 1 product : hypothetical protein protein_id : XP_989461.1

name	LOC100039303 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260611 GeneID:100039303
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472649.1

name	LOC670558 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260620 GeneID:670558
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476329.1

name	Lrp11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542055 CCDS:CCDS23686.1 GeneID:237253 MGI:2442989
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006897 - endocytosis [Evidence IEA] codon_start : 1 product : low density lipoprotein receptor-related protein 11 protein_id : NP_766372.1

name	Pcmt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679217 CCDS:CCDS23687.1 GeneID:18537 MGI:97502
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006479 - protein amino acid methylation [Evidence IDA]; GO:0006464 - protein modification [Evidence IEA] codon_start : 1 exception : mismatches in translation note : protein carboxyl methyltransferase product : protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 protein_id : NP_032812.1

name	Nup43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21844545 GeneID:69912 MGI:1917162
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : nucleoporin 43kDa product : nucleoporin Nup43 protein_id : NP_663752.1

name	Lats1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82932138 GeneID:16798 MGI:1333883
definition	codon_start : 1 product : large tumor supressor isoform 1 protein_id : XP_618738.2

name	Katna1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754410 CCDS:CCDS23689.1 GeneID:23924 MGI:1344353
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005813 - centrosome [Evidence IDA]; GO:0005811 - lipid particle [Evidence IDA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IDA]; GO:0045502 - dynein binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008568 - microtubule-severing ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0031122 - cytoplasmic microtubule organization and biogenesis [Evidence IDA]; GO:0007067 - mitosis [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0008104 - protein localization [Evidence IPI] codon_start : 1 exception : mismatches in translation product : katanin p60 (ATPase-containing) subunit A1 protein_id : NP_035965.1

name	BC013529 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703834 GeneID:215751 MGI:2384905
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC215751 protein_id : NP_663393.1

name	Ppil4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312976 CCDS:CCDS23690.1 GeneID:67418 MGI:1914668
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : peptidylprolyl isomerase-like 4 protein_id : NP_080417.1

name	Zc3h12d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370166 GeneID:237256 MGI:3045313
definition	codon_start : 1 exception : mismatches in translation product : zinc finger CCCH-type containing 12D protein_id : NP_766373.1

name	Map3k7ip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149752 CCDS:CCDS23691.1 GeneID:68652 MGI:1915902
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : Tak1 binding protein 2 product : mitogen-activated protein kinase kinase kinase 7 interacting protein 2 protein_id : NP_619608.1

name	Ust (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110556631 GeneID:338362 MGI:2442406
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : uronyl-2-sulfotransferase protein_id : NP_796361.2

name	LOC100039173 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260628 GeneID:100039173
definition	codon_start : 1 product : similar to peritrophic matrix insect intestinal mucin protein_id : XP_001472398.1

name	Sash1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112821670 CCDS:CCDS23692.1 GeneID:70097 MGI:1917347
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA] codon_start : 1 note : putative adapter and scaffold protein 1 product : SAM and SH3 domain containing 1 protein_id : NP_780364.3

name	LOC626333 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626333
definition	number : 1 pseudo : _no_value

name	LOC626333 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626333
definition	number : 2 pseudo : _no_value

name	LOC626333 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626333
definition	number : 3 pseudo : _no_value

name	LOC626333 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626333
definition	number : 4 pseudo : _no_value

name	LOC666541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666541
definition	number : 1 pseudo : _no_value

name	LOC666541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666541
definition	number : 2 pseudo : _no_value

name	LOC666541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666541
definition	number : 3 pseudo : _no_value

name	LOC666541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666541
definition	number : 4 pseudo : _no_value

name	LOC666541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666541
definition	number : 5 pseudo : _no_value

name	LOC100041405 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041405
definition	number : 1 pseudo : _no_value

name	LOC100041405 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041405
definition	number : 2 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 6 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 5 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 4 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 3 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 2 pseudo : _no_value

name	LOC672213 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672213
definition	number : 1 pseudo : _no_value

name	LOC100039046 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039046
definition	number : 1 pseudo : _no_value

name	LOC100039046 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039046
definition	number : 2 pseudo : _no_value

name	9230019H11Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260612 GeneID:215728 MGI:3588256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9230019H11 gene transcript_id : XR_035195.1

name	LOC665035 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260626 GeneID:665035
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_030610.1

clone name	MSMg01-213L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124L23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-209E16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-519I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510C21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-545E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394E09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-164E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135L11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-397P04.T7 (MSMg01no397_p04.b1)	MSMg01-397P04.TJ (MSMg01no397_p04.g1)
ACC	AG498167	AG498168
length	808	786
length of high quality (start - end)	244 (71 - 314)	344 (76 - 419)
definition	CHROMAT_FILE: MSMg01no397_p04.b1 PHD_FILE: MSMg01no397_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:32 2005	CHROMAT_FILE: MSMg01no397_p04.g1 PHD_FILE: MSMg01no397_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:32 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAACATCCGCGGAA TTCAATTCCTTTCACCACATGGTGGCTCTCAACCATCTGTAGTGGGATCT GATGCCGCCTTCTGGTGTGTCTGAAAACAGTGACAGTATACTCATATAAA ATGAAATAAATAAATCTTTAAAAAAATACAAAAAAATATAAAGGTACTTT TCTGCATTTAAAAAGAAAAATGAGTTTTGGAAGTTGATTCTTCCACTGTG TGTTTACTTCTCTGAAGGCAGTGGGGCCTGGGAGAATGGAGGTGATAAGT GAGGCCGACTGAAGGTTCTTTTTGTAGCTCGCTCACTTTACTCAGATCAC TGCACAGTTTATACTCTGAGGGTAAGAGGAGGCCAAGCTGCATGTGAAAA CCCAACAGATAACAACCGCCAGTTGTAACACATAACTTGAAATAAACTCA CTCTTATCTCCTGCTGCACGTGTGAGGTATTGGTTAGTACTTATCTTATA TCATCTTCCCGCTTTTGCATTATTCGCATTTTCTTATATTCTTATCCCTG CCCTTTTAGAAATTCCCCTCTTCTTTTTTTCTCAAAATATCACAATCTCT CTTCCACTTATTCCTTTATTCTTTTTTCCCCCCCCCCCTTCACTCCTTTC TCCCTTTTACCTTTCATTCCCATCTCCCTCCCTCTTTTCTTTTTCCCCCT TCTTTTATCATCCCCCCTTCTTTCTCTCCCATATCTTTTTATATATCGTA TCCCCGCACTATACTACCCCTACTTATCTCTCACTTAATTCTCCACCCCT CTTCTCCT	GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXTCATGGAGCCCATATTGGCTGAATG TCTATGTCATTGTTCAGCTAAGAAAAAAGAATCCAGGCATTCCAATCTAA CTGGTAGACTGTTCCCTTAGGGGACATGAATGTCACACTGCCATAGCCTT ACCCCCCTTGCTGATAAGACTGTCCATGCTTCCCTTTGTCCTGGTTTTCA CACACACTGAGGATCCACCAGTCATGACTGGCTTTTTCCGTAGCCTAGAC CACAGAGTGAGAAAGGGGTACCAGGACCATGTGCATCAAGTCCACGGCAT CAAGTCAGGGATGTGGCTAGGACTACCTTCAATACTTCTCTGCTGTGAAC TGGTTTTGCCTGAGCTTATTGCCAAGAAACTGGCCAGCCAGGCATATTGA GCAAACTGAGTTTATAATCCCTTAGAGTATACAGCCAGAATACCCTTGTG AATCCTTGTAATGACTACCCCCGAAACAAGCCCCCTATGGTAACTCTTCC CCACGCTCTATTTGCTTTTTACCGTCCTTCGAAAACCCGAATTCTTGCTC TGCTCTCTCCTATTATATCGTATTCGCGTACTCACCCTACGCTGCCCCTA CTAATATCTTCTATCGCCATATCTATGCTTCTCCCATACACATCTTTTTT ATTCCGTTTCATAACTTCTCTTGCATACCTATTTTATCCTCACATCCAAT TTTTGTTGTGCTTTGCCTTTATCTCCACACACCCTN
quality values	Open. Hide. 8 8 8 8 10 8 11 21 20 28 28 34 34 37 37 28 28 18 14 19 27 27 39 22 22 20 15 15 8 8 6 9 8 8 8 8 9 10 9 9 9 10 13 13 18 27 30 31 31 31 31 33 33 30 30 21 18 9 9 9 12 12 11 10 10 17 12 15 12 22 12 18 28 32 59 59 59 53 53 53 50 50 53 53 53 53 53 59 59 59 59 59 59 59 48 48 48 53 53 68 68 54 54 54 54 59 59 68 68 68 41 34 30 14 14 14 34 27 35 37 37 44 57 54 57 57 57 57 57 48 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 50 50 50 50 50 50 50 50 50 47 47 47 57 57 52 57 57 54 57 57 59 59 57 59 57 57 57 57 57 57 57 57 54 54 54 57 57 57 57 57 57 57 57 57 57 54 59 54 57 57 57 59 59 59 59 54 54 54 59 59 59 59 57 57 57 54 54 57 59 57 57 57 57 57 47 48 48 50 57 59 50 57 57 57 57 57 54 57 57 57 57 68 68 68 68 57 57 46 46 43 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 48 43 43 37 37 35 35 32 40 40 28 28 28 28 32 36 42 43 39 42 42 42 30 30 30 33 33 35 35 35 39 39 39 39 30 34 28 30 30 59 39 32 26 15 13 12 13 9 9 9 10 10 10 10 12 16 23 37 37 43 39 46 40 48 48 48 48 48 48 48 48 48 30 23 13 9 9 9 9 13 23 34 28 19 13 13 15 28 31 43 46 46 48 48 43 46 43 36 36 23 23 23 23 23 36 19 21 14 15 15 21 15 13 12 12 12 18 18 21 20 32 37 43 37 40 28 28 28 29 29 23 23 23 16 21 18 19 24 24 24 30 22 22 9 8 8 8 8 8 10 12 11 12 12 11 13 10 10 10 13 15 21 15 10 8 8 8 8 15 16 20 20 20 20 15 15 12 12 12 16 16 19 19 30 36 29 28 28 28 28 28 28 26 26 15 15 11 12 12 14 17 16 16 11 11 12 10 8 6 6 8 8 11 10 10 10 9 9 11 13 12 12 15 15 14 8 8 8 8 11 12 15 8 8 8 8 8 9 14 12 12 12 11 11 11 18 10 10 9 10 10 10 10 9 8 8 10 12 14 12 12 8 8 12 8 8 8 6 6 8 8 8 10 11 10 8 8 8 8 8 6 6 8 8 16 12 9 9 9 9 8 8 10 10 10 11 10 8 8 8 8 10 8 8 8 8 12 11 11 10 9 8 8 8 8 10 13 14 8 8 8 8 8 8 10 10 10 8 10 8 8 8 8 10 10 10 8 8 10 10 13 13 19 19 16 12 8 8 8 7 10 10 12 10 10 9 13 10 10 10 11 15 19 17 13 13 10 9 9 10 10 13 10 9 9 10 8 10 8 8 8 10 12 8 19 16 19 16 16 12 12 15 17 13 12 12 10 9 9 9 10 10 10 10 10 9 12 9 15 15 12 10 12 9 9 9 13 10 8 6 6 8 6 8 8 8 12 10 10 9 9 12 15 16 18 10 9 6 6 7 7 10 10 14 24 13 16 12 9 9 9 10 8 8 8 8 8 8 8 10 9 8 8 8 8 8 8 12 8 8 8 8 8 8 8 9 9 9 10 10 11 11 19 13 11 10 6 6 6 6 8 8 8 10 8 8 10 12 24 24 30 15 18 14 10 8 12 7 9 8 11 10 11 9 9 9 8 6 6 6 11 10 8 8 8 8 8 8 8 9 15 8 7 6 6 8 8 6 6	Open. Hide. 8 8 8 8 8 11 11 15 8 9 9 9 18 19 37 32 37 34 39 43 43 43 44 44 39 37 44 44 39 28 23 12 11 11 15 23 32 25 26 24 24 30 30 48 53 57 57 47 47 47 47 47 53 53 53 53 53 57 57 57 34 37 36 36 36 42 43 57 57 42 47 42 50 50 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 51 50 50 50 57 59 68 68 68 68 68 68 68 68 68 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 62 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 59 59 52 52 52 57 57 68 68 68 68 68 68 68 57 57 57 57 52 52 57 57 57 59 59 59 59 59 57 57 52 52 52 52 52 52 57 57 57 57 59 59 54 54 54 57 59 59 47 47 35 35 35 44 44 57 57 57 59 57 57 48 48 48 48 48 47 57 44 48 48 57 57 57 42 42 37 37 37 42 39 57 57 57 54 48 48 54 47 47 39 39 32 37 37 43 43 57 57 59 43 43 41 41 30 28 28 33 36 36 43 31 34 28 34 25 32 32 37 37 37 39 33 20 24 11 11 11 24 26 20 13 10 10 10 11 17 10 8 8 8 12 10 14 18 24 32 26 24 20 15 13 10 10 8 8 8 17 14 21 15 11 10 10 10 10 12 15 19 15 13 13 13 21 25 28 28 15 14 8 8 8 8 10 6 6 6 8 8 8 10 10 8 8 10 9 9 10 10 10 10 10 10 10 11 9 9 9 16 13 14 11 11 11 11 14 14 13 10 10 10 10 10 9 10 15 15 9 9 10 10 11 11 9 9 9 9 9 12 12 12 9 9 10 10 12 12 14 12 8 8 8 10 8 8 9 10 10 15 15 16 16 10 10 10 9 9 9 10 8 8 8 10 10 13 10 9 10 10 15 11 11 11 10 10 10 11 11 13 10 10 10 10 10 10 11 13 12 9 7 7 9 9 9 9 8 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 10 10 8 10 10 10 10 8 10 10 14 12 10 10 8 10 9 11 11 11 9 9 12 12 10 10 11 12 8 8 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 9 10 8 11 8 10 9 9 8 8 8 8 8 9 11 11 13 10 10 10 10 10 8 8 10 8 8 8 9 14 15 24 10 9 9 15 12 10 10 10 8 8 8 6 6 8 8 8 8 10 10 12 11 11 8 8 8 10 10 8 10 8 8 8 8 9 10 14 14 11 13 13 9 9 9 16 11 10 11 11 11 10 10 14 12 11 9 9 9 8 8 8 8 9 10 8 13 10 10 11 10 10 10 8 7 7 8 11 9 10 8 6 6 6 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no397_p04.g1 MSMg01no397_p04.g1 CHROMAT_FILE:
MSMg01no397_p04.g1 PHD_FILE: MSMg01no397_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:32 2005
         (344 letters)



>mm_chr10_7710746_7711488
          Length = 743

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatggagcccatattggctgaatgtctatgtcattgttcagctaagaaaaaagaatcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 543 tcatggagcccatattggctgaatgtctatgtcattgttcagctaagaaaaaagaaccca 484

                                                                       
Query: 61  ggcattccaatctaactggtagactgttcccttaggggacatgaatgtcacactgccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 ggcattccaatctaactggtagactgttcccttaggggacatgaatgtcacactgtcata 424

                                                                       
Query: 121 gccttaccccccttgctgataagactgtccatgcttccctttgtcctggttttcacacac 180
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcctta-ctcccttgctgataagactgtccatgcttccctttgtcctggttttcacacac 365

                                                                       
Query: 181 actgaggatccaccagtcatgactggctttttccgtagcctagaccacagagtgagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 actgaggatccaccagtcatgactggctttttccgtagcctagaccacagagtgagaaag 305

                                                                       
Query: 241 gggtaccaggaccatgtgcatcaagtccacggcatcaagtcagggatgtggctaggacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggtaccaggaccatgtgcatcaagtccacggcatcaagtcagggatgtggctaggacta 245

                                                       
Query: 301 ccttcaatacttctctgctgtgaactggttttgcctgagcttat 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccttcaatacttctctgctgtgaactggttttgcctgagcttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information