NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTATACTGTTTTTTTGTACCCAATAAAGAATTAAGTTTGCTTC
CCATTCAGTATAGTGGGGGATTTCTGAGATGACTCTCAATAAATGATTTT
CAATCTTATCTGAGCCCCATCTGTACAAAAAGAGAAACACGTTTGAAAAT
ATTATCCCTGTTATAAATGTTTTCCAGTATAGAAAATATTATTTTACATA
TATAATTAAAAAACTGGATGTTACATGACTTTTTGCTGAGGAGGAATGTG
TATTGAATTTAAAGTAATCTAGAAAGTATATGTGTCATAAACATTTCTGT
CTGTATTTATCGAGAAATTTCAATGAAGAGTCCCATACTTGCTTCAAGGA
CAAATGACATTTTATAGCATTAATCTACACATGGAAGTCCTCAAAATGTT
TAAATATTGCTTCTAATGAAGAGTGAACATGAGACAGAATATCCATCTCC
AGAGGAGAACCACATATTTTATGTAAATTTCAGCTCAATGAGATAGACAG
CTAAAATGTGACCTCTGAACTACAGAACTACAGAAACTGAGAATTTTTTC
CTCAAACCTTTATGCCCAGGCTTGAGAATGTGACCCTTGTGACTAAATGC
TCCAAGACATGCTAATCATAAAACTGGTAGCAACATTCCTCCACCAAACT
GCTTCCTGGTGTTTGTTTGTAAAGAGGTCACACTGACCTTTCCTGTAAAC
TGCT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTTTAGCTTTGTACCCCATTTTT
AAATGAGGTTATTTGATTATCTTGAGTCCATCTTCTTGAGTTCTTTGTAT
ATAGGATTTAGGATTGGTAAAGATCCTTTCCAAATATGTTGGTGGCCTCT
TTTTGTTATTGACACTGTCTTTTGCCTCACAGAAGCTTTACAGTTTTATT
AGGTCCCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTTCCTTTGTGCATAGATCTTTAAGGCTTTCCCCCACT
TTCTCCTCTATAAGTCTCAGTGTTGGTTTTATGTGGAGTTCCTTGACCCA
CTTACTTAGATTTGAGCTTCGTACAAGGAGATGAGAATGGATCAATTTGC
ATTCTTCTACATTATAACTGCCAGTTGAATGAGCACCATTTGTTGAAGAT
GCTGTCTTTTTCCCACTGGATAGTTTTAGCTCCCTTGCCAAAGATCTTAA
GTGTGTGGGTACTTTTTCTGCGTCCCTACATCCCTTTCCCTTGATCTACC
CTGCTTGCCCTTGTACCTGTTCTCTTACTGTTTTAATACCCAACTTGTTC
CTGTTTTAAATCTTGTGCTCCCGTTCAGCGCATTCCCTCCCTTAAAATTC
CCCTATTGGTGTGCAATATAGCATTCACTATATCTTAACTCTTTCTTGCC
TTTTATTATACCCTATCTCTCCCCCC

Query= MSMg01no398_a22.b1 MSMg01no398_a22.b1 CHROMAT_FILE:
MSMg01no398_a22.b1 PHD_FILE: MSMg01no398_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:41 2005
         (573 letters)



>mm_chr10_48342998_48343970
          Length = 973

 Score =  973 bits (503), Expect = 0.0
 Identities = 542/555 (97%), Gaps = 1/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  ttttttgtacccaataaagaattaagtttgcttcccattcagtatagtgggggatttctg 79
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 971 ttttttgtacccaataaagaattaagtttgcttcccattcggtatagtgggggatttctg 912

                                                                       
Query: 80  agatgactctcaataaatgattttcaatcttatctgagccccatctgtacaaaaagagaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 911 agatgactctcaataaatgattttcaatcttatctgagccccatctgtacagaaagataa 852

                                                                       
Query: 140 acacgtttgaaaatattatccctgttataaatgttttccagtatagaaaatattatttta 199
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 851 acacgtttgaaaatattatccctgttataaatgttttctagtatagaaaatattatttta 792

                                                                       
Query: 200 catatataatt-aaaaaactggatgttacatgactttttgctgaggaggaatgtgtattg 258
           || |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 791 cacatataattaaaaaaactggatgttacatgactttttgctaaggaggaatgtgtattg 732

                                                                       
Query: 259 aatttaaagtaatctagaaagtatatgtgtcataaacatttctgtctgtatttatcgaga 318
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 731 aatttaaagtaatctagaaagtatatgtgtcataaacatttctgtctatatttatcgaga 672

                                                                       
Query: 319 aatttcaatgaagagtcccatacttgcttcaaggacaaatgacattttatagcattaatc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 671 aatttcaatgaagagtcccatacttgcttcaaggacaaatgacattttacagcattaatc 612

                                                                       
Query: 379 tacacatggaagtcctcaaaatgtttaaatattgcttctaatgaagagtgaacatgagac 438
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tacacatggaagttctcaaaatgtttaaatattgcttctaatgaagagtgaacatgagac 552

                                                                       
Query: 439 agaatatccatctccagaggagaaccacatattttatgtaaatttcagctcaatgagata 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agaatatccatctccagaggagaaccacatattttatgtaaatttcagctcaatgagata 492

                                                                       
Query: 499 gacagctaaaatgtgacctctgaactacagaactacagaaactgagaattttttcctcaa 558
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 gacagctaaaatgtgacctctgaactacagaactacagaaactgagaatttttttctcaa 432

                          
Query: 559 acctttatgcccagg 573
            | ||||||||||||
Sbjct: 431 gcttttatgcccagg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)