BAC Information

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BAC

Clone NameMSMg01-398K22
Chromosome10 (Build37)
Map Location 119,975,643 - 119,976,127
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2
Downstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398K22.T7 (MSMg01no398_k22.b1)MSMg01-398K22.TJ (MSMg01no398_k22.g1)
ACCAG498727AG498728
length743762
length of high quality
(start - end)
485 (78 - 562)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no398_k22.b1 PHD_FILE: MSMg01no398_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:29 2005CHROMAT_FILE: MSMg01no398_k22.g1 PHD_FILE: MSMg01no398_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGGACTCCGTCACCATAGAGTCCAGAATAAAGTCCAGT
TTTGTTCCAACCCAGTCTTCAAATGATTGGTAATGAGAGAGAAGGCCAAT
GTATTCCCCCCTCCCCACTTTGAAGGCAGCCTGGGACCACCCAGGAGCTG
GCCTCGCTGGAGAAAGTAGACGCATGTTTATGTAGGAATCCGAGCTGTAG
AGAACATGGAACACCTGTGCTCTGTGGGCTTCATGGCCCCAATTAGCTTC
TGGAAAGAATTCAGGGTAAAAACTCCTTTATGCAATGCCCGCCCAGTGCC
TCCATCCCGAGCCCTCAAATGGTTTCCTCAGTTCTGTGAACTATGCATCA
GTCAGTAATAGCTCACTCACCCAACCCAACGGAGGGCCATTCAGAAAAGA
GACTTGACTTACCAGAAGACAAGAATAGAGTGCTTGCATAGGAAGCTGAC
AGTAGGGTATGAGAAAGGACGGTCAGAGTCTAGAACCATTCATGATGAAA
ACGTGGAGCAGAAGGGAGGATCTCCTGGAAGAATGGATGCAAGGATGTTC
CCCAGGTAGGGAAGGTGGCTTTTGACCACCCTGTTTTATTTAGGAAGCAT
TTCCTGAGACCCCAAATGTGTGAAATTATTGCTTTTCTTATTTTTGAACC
TATAAATAATGTTGTGCCATAGGAAAAAAAACCCCGCCATGGG
NCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATGGAAACTGTAAAAGCCAG
AAGGGCCTGGACAGATGTTCTATAAACTCTTAAGAGACCACAGATGCCAC
CCAGACTACTATAGCCTGTTGTGGATAGCCCTGGGGCTAATCATATTTGA
TGCTAATTCCATTCTCCTGTGAGGGCTGCAAACAAGGAATGAGTCAGCAC
TCATGTGATTTCCTATAAACCTGTTTCCCACCTTAATTTATAAAATAAAG
GAGAGGTGATGATTGGGCAGATAATTGTTAGGTGGAGCAGAAGCGGGGAA
GAGAAAAGAAGGAAAACATGGAAGAGGGAGAGGATGCAGAGGAGGAGGAA
GAAGAAGAACAAAAGAAGAGCAGAAGCACATGGCCTGGAGAAACGGCAAG
TTCTAAAGGGTCTCATGATGGAGAGGATGGTAGAGTGCTGGTAGATCTGC
CCAATCTAGGCACAGAGCATGTATTCATATTAATTGAGTTGTGTTTTCAT
TGCCGCGCTAATTTGGGTGAAAATTTACCGCAACTATACCCAGGTAAACT
TTCAATTACCGTAGATGAACAGAAACACATACTCCTATATATAAATAAAT
TTAATTCTTTTTTTATGTATATAGCCTACCAATTCTGCCCCAACCCAGGG
CACTTCTAGCGAATATTCCCCATCCGAAAGGGGTTAACCCCCCTGTAAGA
AAAATTTACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_k22.b1 MSMg01no398_k22.b1 CHROMAT_FILE:
MSMg01no398_k22.b1 PHD_FILE: MSMg01no398_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:29 2005
         (485 letters)



>mm_chr10_119975443_119976327
          Length = 885

 Score =  907 bits (469), Expect = 0.0
 Identities = 481/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagtccagaataaagtccagttttgttccaacccagtcttcaaatgattggtaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagtccagaataaagtccagttttgttccaacccagtcttcaaatgattggtaatgag 260

                                                                       
Query: 61  agagaaggccaatgtattcccccctccccactttgaaggcagcctgggaccacccaggag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaaggccaacgtattcccccctccccactttgaaggcagcctgggaccacccaggag 320

                                                                       
Query: 121 ctggcctcgctggagaaagtagacgcatgtttatgtaggaatccgagctgtagagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcctcgctggagaaagtagacgcatgtttatgtaggaatccgagctgtagagaacat 380

                                                                       
Query: 181 ggaacacctgtgctctgtgggcttcatggccccaattagcttctggaaagaattcagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacacctgtgctctgtgggcttcatggccccaattagcttctggaaagaattcagggt 440

                                                                       
Query: 241 aaaaactcctttatgcaatgcccgcccagtgcctccatcccgagccctcaaatggtttcc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aaaaactcctttatgcaatgcccgcccagtgcctccatcccgagccttcaaatggtttcc 500

                                                                       
Query: 301 tcagttctgtgaactatgcatcagtcagtaatagctcactcacccaacccaacggagggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagttctgtgaactatgcatcagtcagtaatagctcactcacccaacccaacggagggc 560

                                                                       
Query: 361 cattcagaaaagagacttgacttaccagaagacaagaatagagtgcttgcataggaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattcagaaaagagacttgacttaccagaagacaagaatagagtgcttgcataggaagct 620

                                                                       
Query: 421 gacagtagggtatgagaaaggacggtcagagtctagaaccattcatgatgaaaacgtgga 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gacagtagggtatgagaaaggatggtcagagtctagaaccattcatgatgaaaacatgga 680

                
Query: 481 gcaga 485
           |||||
Sbjct: 681 gcaga 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)