BAC Information

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BAC

Clone NameMSMg01-399A20
Chromosome10 (Build37)
Map Location 100,831,985 - 100,832,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A20.T7 (MSMg01no399_a20.b1)MSMg01-399A20.TJ (MSMg01no399_a20.g1)
ACCAG499010AG499011
length728727
length of high quality
(start - end)
606 (71 - 676)271 (74 - 344)
definitionCHROMAT_FILE: MSMg01no399_a20.b1 PHD_FILE: MSMg01no399_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:58 2005CHROMAT_FILE: MSMg01no399_a20.g1 PHD_FILE: MSMg01no399_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTTTGTTTATCTCCGTACTCCATTGTTTTCAATTTTTATTAGATATT
TTCTTCATTTACATTTCAAATGCTATCCTGAAAGTCCCTTATACCCTCCC
CATGCTCTGCTTCCCTACCCACCCACTCCCATTTCTTGGCCCTGGCGTTC
CCCTCTACTGGGACATATAAAGTTTGCAAGACCAAGGGGACTCTCTTCCC
AATGATGGCTGACTAGGCCATCTTCTGCTACATATGTAGCTAGAGACATA
AGCTCTGGGGGTACTGGTCTGTACTCTCCATTTTTAATAGGGTTATTTGA
TTTTCTAGAGTCCATCTTCTGGAGTTATTTATATATATTGGCTATTGGTC
TCCTATCTGATTTAGTATTGGCAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTT
TATGAGATCCCATTTGTTGATTCTCGATCTTACAGCAGAAGCCATTGCTG
TTCTGTTCAGGAAATTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCA
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGTTTTTATGTGGAGCTACTT
GATCCACTTACACCTGAGCTTTGTACAAGGAAATAATAATGGATTAATTT
GCATTCTTCTACATGATATCTGCCAGTN
AATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAGTTGTTATTACAATTTGGATGAT
GTATAATCTGCAAATATCAATGTTATGAAGGCTGTTATTTAAGGTCTCTG
TGCCATGTGTTAAAGTCTGTTCCCAGGGCGGCTTTGCTAGGTTATGCCAC
TTGGAAAGTACCTTCCAAACGGTTTGAGGCTCTTACACTCTTGCTCTGCT
GGTTGTATCCAGGGACATAATGTAAAAGGCTTTGCCTTATCCTGCACCCC
TCCAATGATGTGCTGCCTTGGTATGTTTACTCCAAACTGTGGTCTATGGG
TCATGAGCTAGAACATAAAAAAACTCTAATAAAGCTTTGCATTTGCCTAT
TAACTTAAACATTTTTTCCTACCGACAGAAAATGTCTAGTACTTGTAATT
ATCACTTGTAAAAAAATCAAGTTCATTTTGCATATTGTGAACATAGTGTC
CACAAACATTTATTTTAAATATCAATATTCTCCAATAATTATACTTCATG
TACCCCCCATAAACATACTGCATGTATTCTTCTATCAAGTAATGAACATC
TATACATATATAGAAAGGCGCCGGATAGAGTCCATTAAGTATTTTCATAT
TACAATACATCTTCCTATTTGCCACCAACCACTGAATTCTACATGATACT
TACTACGCATTATATTTTTGCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a20.g1 MSMg01no399_a20.g1 CHROMAT_FILE:
MSMg01no399_a20.g1 PHD_FILE: MSMg01no399_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:58 2005
         (271 letters)



>mm_chr10_100831785_100832454
          Length = 670

 Score =  435 bits (225), Expect = e-126
 Identities = 258/269 (95%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagttgttattacaatttggatgatgtataatctgcaaatatcaatgttatgaaggct 60
           ||||||||||||||||||||||||| | ||||||||| ||||||||||||||  ||||||
Sbjct: 468 catagttgttattacaatttggatggtatataatctggaaatatcaatgttacaaaggct 409

                                                                       
Query: 61  gttatttaaggtctctgtgccatgtgttaaagtctgttcccagggcggctttgctaggtt 120
           |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 408 gttatttaaggtctctgtgccatgtgttaaagtctgttccca-ggtggcgttgctaggtt 350

                                                                       
Query: 121 atgccacttggaaagtaccttccaaacggtttgaggctcttacactcttgctctgctggt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atgccacttggaaagtacctttcaaacggtttgaggctcttacactcttgctctgctggt 290

                                                                       
Query: 181 tgtatccagggacataatgtaaaaggctttgccttatcctgcacccctccaatgatgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 289 tgtatccagggacataatgtaaaaggctttgccttatcctgcacccctccagtgatgtgc 230

                                        
Query: 241 tgccttggtatgtttactccaaactgtgg 269
           |||||||||||| ||||||||||||||||
Sbjct: 229 tgccttggtatggttactccaaactgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 670
Length adjustment: 9
Effective length of query: 262
Effective length of database: 661
Effective search space:   173182
Effective search space used:   173182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)