BAC Information

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BAC

Clone NameMSMg01-399L20
Chromosome10 (Build37)
Map Location 94,940,378 - 94,940,621
singlet/doubletsinglet
Overlap geneLOC100042004
Upstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2
Downstream geneD10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491, LOC667380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399L20.T7 (MSMg01no399_l20.b1)MSMg01-399L20.TJ (MSMg01no399_l20.g1)
ACCAG499530AG499531
length791794
length of high quality
(start - end)
246 (76 - 321)132 (80 - 211)
definitionCHROMAT_FILE: MSMg01no399_l20.b1 PHD_FILE: MSMg01no399_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:50 2005CHROMAT_FILE: MSMg01no399_l20.g1 PHD_FILE: MSMg01no399_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATATGGATC
CGCGGAATTCTAGCCTTCCTGAAGATTTGCTTGCAGTAGAGAGGTGTAAC
AGCCACAAGCTTCTTGATGGAGTCGGTTGGGGTTTTTTGTTTGTTTGTTT
GTTTGTTTTCTGGAAAGTTGATAAACTTAATGAGGACATGGCTTGCAGCG
TGGCAGGCACAACACCTGATGCTAAGGTCCTGACTAATTCATTGCTCATA
GGTATTTATTCCAGTAACATGAGCCAATTCCACGTGCGCAGTTGTTTACA
GCACTGTGCTATCACAGATTTTTTTGCCCAGTTTGGAGGGAAGTGCCCTG
TTGCTGTTTCCTTGCTGCGCATCGCCTGCTTTAATCACCATGGCTTTCTG
GTCTGTTAATACCGATCCCCCCCCCTGATCATCTCCACACTCCACTGTTC
TCATTTCGCGTCTCGTTTCGATACCATACTACTATGTCATTACAAATGAT
TCTTGAAGTCCACTTTCTCTCTATCTCGTCCTTATGATTCCTCTTCTTCT
ACTACACTTTTTCCTTCTTCTGCTCTCCTGTCCTCATTCCTACAACGTTC
TCTCCCCTTCTTTCTCCTTTGCTTTCCTCCTCTTCCTCCTTTTCCTCTCT
CATTCTCTTCCACTCTCTCCCCCTCCCGATCTTTCCTCTCTATCTTCTTA
TGCCTACTTATCCCCATCTCTTCCCGTCCCCCTTCTTCCTCCTATTCCTT
TTGTTTTTACTCTTCCATACCCATCTTTCTACAATTTATTG
NNNCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTATACCAGCTTATGTT
GGGCAAACATTACTCTGTAATTTAAAACTGTTGGTTGAATAAAATTGGCG
ACAGTCAATTACTGGAGGAAATAGAGGTAGGTGGGTTTTCAGTTATGTGG
CTGGGGGTCACAGGAAGAGAATAGGGAGAAAGGTCACACAGGAGGAAGCC
ACCATGATGGTAGATGGCCTACAGAAACAGCTTGTATCTGTTGTACACTG
CTGGCGAGGGTAGCCAGTATATTTTTTACAATAGTATATTACGGTCCACT
CCCCAGCTCTGGTTTTTTTCTACCGACATAACCACCGTTCTGGGTCTCAT
CCTTTTTGTACCTCACCTTGTTCCCCCCCCTATTTTTTCTTTCTCCTCTT
TTTACTTTATCTGCTCTTCAGCCTCATCTTCTTCTCTTATTTTCTTCCGC
GCCCTACTTTCTTTTTTCCTCCCTCCTATTCTCCCCCCCCCGTTCTTTTT
GCTTTTTTCCCCCACTCCTTCTCCGCCCCCTTTTTTTTCTCCCCTCCCCC
ATTGCTTTTTCCTCTTGTTTTTATCCCTCTTCTCCGCTCCTCTCTTTTTT
CTTTTTTTTTTTCCCTTTCTCCCCCTCCCGCCTTATCTGATCCCCTCTTC
TTCCTCCTTACTTTCTCTTCTTTCTCTCTCCCCCTCTCCTCCTCCCTTAT
CTCCTCCTTTCCTTTCTTCTCCTTCCCTCTCCCTCCTCTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_l20.b1 MSMg01no399_l20.b1 CHROMAT_FILE:
MSMg01no399_l20.b1 PHD_FILE: MSMg01no399_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:50 2005
         (246 letters)



>mm_chr10_94940095_94940740
          Length = 646

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcttgcagtag-agaggtgtaacagccacaagcttcttgatggagtcggttggggtt 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttgcttgcagtagaagaggtgtaacagccacaagcttcttgatggagtcggttggggtt 468

                                                                       
Query: 60  ttttgtttgtttgtttgtttgttttctggaaagttgataaacttaatgaggacatggctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttttgtttgtttgtttgtttgttttctggaaagttgataaacttaatgaggacatggctt 408

                                                                       
Query: 120 gcagcgtggcaggcacaacacctgatgctaaggtcctgactaattcattgctcataggta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 gcagcgtggcaggcacaacacctgatgctaaggtcctgactaattcattgctcagaggta 348

                                                                       
Query: 180 tttattccagtaacatgagccaattccacgtgcgcagttgtttacagcactgtgctatca 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttattccagtaacaggagccaattccacgtgcgcagttgtttacagcactgtgctatca 288

               
Query: 240 caga 243
           ||||
Sbjct: 287 caga 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)