BAC Information

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BAC

Clone NameMSMg01-400D09
Chromosome10 (Build37)
Map Location 124,541,834 - 124,542,173
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503E24Rik, LOC671416
Downstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D09.T7 (MSMg01no400_d09.b1)MSMg01-400D09.TJ (MSMg01no400_d09.g1)
ACCAG499888AG499889
length777783
length of high quality
(start - end)
347 (72 - 418)553 (72 - 624)
definitionCHROMAT_FILE: MSMg01no400_d09.b1 PHD_FILE: MSMg01no400_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:26 2005CHROMAT_FILE: MSMg01no400_d09.g1 PHD_FILE: MSMg01no400_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGAGATTACTTTTCAGTGGACAGGGAGCTATTGCAAATACTCAT
GGTATAGGGCAGAGCCTCATCTAGTCTAAGACAATCCTGAAATTACTTTG
AAGATGAACTTTAAATCCCTTTTGCTCCACTTCTAGAGTCCTGGAATTAC
AGGTATGTGCCACCATGCTGGCTTTGTGTGGTACTAGGAATGAAACCCTG
GGTCTTGTGCATGTTAAGCAAGTGCTTTGGTACCCAGACTATACATTGAG
CCCAAAGATGAGCATTTCATAGTGAAACTTTGGGGATGAAAGCTGATAAT
TGGTCACGTTGAATCCAACTTGGCTAGAGATTAGGAAGGTAAGAGGATGT
GAGGTAGGGTGGGTTTGGNGAATGNNNNNNNNNNNTTNNNTTTTTTNTTT
NTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTNN
NTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTNTTNTCTTNTTTT
TTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTNNNTTTTTTTTTNNT
TTTTCNNNTNCCTCCTTCTCTTTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTCAGCTCTTTACCCCATTTTTTAA
CTGGGTAATTTGGTTTTGTGGAGTCTAAATTCTTGAGTTCTTTATATATA
TTGGACATTATTCATCTATTGGATAGAGGGCTAGTGAAGCTCTTTTGTGC
TATTGACAGAGTCCTTTGACGTATAGAAGCTTTTCAGTTTCATGAGATCC
CATTTGTCAATTCTTTTTCTTAGAGCCTGAGTCATTGTGTTCTGTTCAGG
AAATTATCTCCTGTGCTTTTTTTTTCCAGGTTATTTCCTAATTTCTTCTC
TAATTGATTTATGTCTATAGCGGCCTTATTCATAAATCCAGAATCTGGAA
AAAACCCAGTTATCTCTCAACTGAAGAATGGATACAGAAAATTTGGTTCA
TTACATAATGGAATACTATTCAGCTATTAAAAATGAGAATATCATAAATT
TTGCAGGCAAATGCATGGAAGTAGAAATAACAACATCCAAAGTGAGCTAA
CACAGACTCCAAAGGACATGCATGATATATATTCCTGATGAGAGGATATT
AGCCAGCATGTACAGAATACCCATGGTACAACCCACAGACTGTAAGAATT
TTAACAAGAAGAAAGGCCCCAGAGAGGATGTTTCATTCCCACTTACTAGG
AGGAACAAAATAAATATGGGGTCAGAGGGAAGGCAGGGACCTGAACGGGA
AAAAAAGAGGGGTAGGACAAAAAGGGGCGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d09.b1 MSMg01no400_d09.b1 CHROMAT_FILE:
MSMg01no400_d09.b1 PHD_FILE: MSMg01no400_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:26 2005
         (347 letters)



>mm_chr10_124541427_124542173
          Length = 747

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggagctattgcaaatactcatggtatagggcagagcctcatctagtctaagacaatcctg 68
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 747 ggagctattgcaaatactcatggtacagggcagagcctcatctagtctaagacaatcctg 688

                                                                       
Query: 69  aaattactttgaagatgaactttaaatcccttttg-ctccacttctagagtcctggaatt 127
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 687 aaattactttgaagatgaactttaaatcccttttgcctccacttctagagtcctggaatt 628

                                                                       
Query: 128 acaggtatgtgccaccatgctggctttgtgtggtactaggaatgaaaccctgggtcttgt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acaggtatgtgccaccatgctggctttgtgtggtactaggaatgaaaccctgggtcttgt 568

                                                                       
Query: 188 gcatgttaagcaagtgctttggtacccagactatacattgagcccaaagatgagcatttc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcatgttaagcaagtgctttggtacccagactatacattgagcccaaagatgagcatttc 508

                                                                       
Query: 248 atagtgaaactttggggatgaaagctgataattggtcacgttgaatccaacttggctaga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atagtgaaactttggggatgaaagctgataattggtcacgttgaatccaacttggctaga 448

                                                   
Query: 308 gattaggaaggtaagaggatgtgaggtagggtgggtttgg 347
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gattaggaaggtaagaggatgtgaggtagggtgggtttgg 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)