BAC Information

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BAC

Clone NameMSMg01-400G07
Chromosome10 (Build37)
Map Location 34,717,927 - 34,718,431
singlet/doubletsinglet
Overlap genenone
Upstream geneRwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400G07.T7 (MSMg01no400_g07.b1)MSMg01-400G07.TJ (MSMg01no400_g07.g1)
ACCAG500026AG500027
length759802
length of high quality
(start - end)		509 (54 - 562)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no400_g07.b1 PHD_FILE: MSMg01no400_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:41 2005CHROMAT_FILE: MSMg01no400_g07.g1 PHD_FILE: MSMg01no400_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAG
AATCCGCGGAATTCATTATTTTATACATTTAAATTACTCTAATAAAAGGC
TTTTAAGAATCAAGCCCAAAGCAGGTATATACTTCCTTTATAAGTACAAA
AACTGTAAAAACAAATCCACTGTTGTTTCTATGTAAAGCAATGCATAGCA
AGTACATTTTGATAGAGGAAGATCTTGAAGTATACCCATAAACGTGTATG
TCTGCAAATCTGCCATTTTTTAATTGTATTTTGATGAACTTAATCTGACA
TGGATTATATCCCAGCTCCCCACTGGCTGCTCCCTTCTGAGAACTCAGTG
CTCAGATTTCAGGGCTGTTATGATTAAATTAGGTTGTGTTCACAAAATAC
CTGCATGCAGTAGGCACATAGTTTGCAGTAAATATCAGGTGTAATTTCTG
AAATTTATCATAGTTTTATCAAACTGTAAAAATACAAGTTATACATTTAA
AGAAGGATGAGCAACCATCATCCAGTGAGCAGTTGAGAGTACAAAAGAGG
GAAGGTGCAGTCCTATAGTTTTTGTAAAGTTTTACAGGAAATAAAAGACA
AACCACCTCCATTGTTAACATCTTGCTGGCCTTCANTGCAGAAACTAANC
CAGTTGAAATACTTCCGTACTGAAAAGGAAAAGCAAACCCCCCCATGGAA
ATTTTTCGGGAAATCTGTCCCTGAATTGTGGGCCCCCTGCCTTTTTAAGT
TTAAAAAAN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTGGGTCTTCAATTCTATTCCA
TTGATCTTACTGCCTGTCTCTGTACCAAGACCATGCAGTTTTATCACTAT
TGCTCTGTAGTACAACTTGAGGTCAGGGATCATAAATCCCCAAGAAGTTC
TTTTATTGATGAGAATAGTTTTTGCTGTATAGTGTTGTTGTTGTTGTTAT
TCCAGATGAATTTGTAAATTGCCCCTTACAAATTCATACAAACTCTATGA
AGAATTGAGTTGGAATTTTGATGTGTTTTGTATTCAATCTGTGTATTACT
TCCAGGAAGATGGCCATTTTACTATACTAATTATGCTAACCCATGGGTAT
GGGAGATCTTTCCATCTTCTGAGATCTTCTTCAAATTCTTTCTTCAGAGA
CTTGAAGNTCTTATACAGATCTTTCACTTCCTTAGTTAAAGTCACACAAA
GGTATTTTATATTATTTGCGACTATTGTGAATGGCGTTGTTTCCCTAGCT
ACTTTCTCAACCTGTTCATCCTTTGGGTAGAGAAAGGGCACCGAATTGCT
CTTATTTTATAATCCACTTACTTCCCTGGAGTTGTTTAACAAGGTTAAGG
GTTCTCCTTGCCATAATTTTTGCGTCCTCCTATTTTATGGATACAACCCT
TCACAAATTTTTCCATAATTGTAATCTCCTTACCTCTCTCCCCTATCAAA
TTGTTGATTCCCTTCTACTTTTTTTTCTTTTACCTTATNTATTTTCCGGT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_g07.b1 MSMg01no400_g07.b1 CHROMAT_FILE:
MSMg01no400_g07.b1 PHD_FILE: MSMg01no400_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:41 2005
         (509 letters)



>mm_chr10_34717723_34718631
          Length = 909

 Score =  961 bits (497), Expect = 0.0
 Identities = 503/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcattattttatacatttaaattactctaataaaaggcttttaagaatcaagccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattattttatacatttaaattactctaataaaaggcttttaagaatcaagccc 264

                                                                       
Query: 65  aaagcaggtatatacttcctttataagtacaaaaactgtaaaaacaaatccactgttgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagcaggtatatacttcctttataagtacaaaaactgtaaaaacaaatccactgttgtt 324

                                                                       
Query: 125 tctatgtaaagcaatgcatagcaagtacattttgatagaggaagatcttgaagtataccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctatgtaaagcaatgcatagcaagtacattttgatagaggaagatcttgaagtataccc 384

                                                                       
Query: 185 ataaacgtgtatgtctgcaaatctgccattttttaattgtattttgatgaacttaatctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaacgtgtatgtctgcaaatctgccattttttaattgtattttgatgaacttaatctg 444

                                                                       
Query: 245 acatggattatatcccagctccccactggctgctcccttctgagaactcagtgctcagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatggattatatcccagctccccactggctgctcccttctgagaactcagtgctcagat 504

                                                                       
Query: 305 ttcagggctgttatgattaaattaggttgtgttcacaaaatacctgcatgcagtaggcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagggctgttatgattaaattaggttgtgttcacaaaatacctgcatgcagtaggcac 564

                                                                       
Query: 365 atagtttgcagtaaatatcaggtgtaatttctgaaatttatcatagttttatcaaactgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagtttgcagtaaatatcaggtgtaatttctgaaatttatcatagttttatcaaactgt 624

                                                                       
Query: 425 aaaaatacaagttatacatttaaagaaggatgagcaaccatcatccagtgagcagttgag 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaataccagttatacatttaaagaaggatgagcaaccatcatccagtgagcagttgag 684

                                    
Query: 485 agtacaaaagagggaaggtgcagtc 509
           ||||||||||||||||||| |||||
Sbjct: 685 agtacaaaagagggaaggtccagtc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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