BAC Information

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BAC

Clone NameMSMg01-400G09
Chromosome10 (Build37)
Map Location 32,145,506 - 32,146,007
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneTpd52l1, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400G09.T7 (MSMg01no400_g09.b1)MSMg01-400G09.TJ (MSMg01no400_g09.g1)
ACCAG500030AG500031
length795791
length of high quality
(start - end)
508 (46 - 553)203 (74 - 276)
definitionCHROMAT_FILE: MSMg01no400_g09.b1 PHD_FILE: MSMg01no400_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:42 2005CHROMAT_FILE: MSMg01no400_g09.g1 PHD_FILE: MSMg01no400_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCAGGCAATTTTCTTCTGCCTTTTATCAAAAGACTCGTGATGATTT
TCTTAGAGAAAAATCATCAGGGCAAATAATTAGTAGATTGTAGTATTTTA
TGCCAAGGCTGCATTTTAATTCACTGATATTGTGTGAGTTCTGAATGCTT
TTGCAGGACTGTGATTGCACAGAGAATTAAATTTAAATGGACCAGTAACT
CATCAGCTCCCGCTAAACAAATGGGAGTGGAGAACTGACAGGAGATAACA
CCTTTGTGACCCCTAACTTGCTTGCACAGTTGTTTGACTTGGCAGAGTTT
GACTCTAGGGTGGAATCTGGGGCTTAGATTTTCCTTTGAAGTGAAATGTG
AAGAGTTAGTGAGGAAAGGAACAAAATCCAGACAACCGGAAAATCAGCAC
AACAATAACAACAGCAATTCCTTCTGGGATTAAAATGTTTTAAGAGCTCT
TGTAGGGACCTGCAAGGGATAGAGGAGGGGGAGAGAAAAAAAGAGGGCAG
CATCAGGTACTGGAGGGGACAGTACAGAGAGATGTATGGAGGTTCAGAAC
ATTGAATAAAAATATGTAGCAATGTGGGATAATTAACTGGGTGGTAACCC
TGTAGGTTCCCCAACTCCCGGAAAGATAGAAGATTCTCCGCACCAAACTT
GGATGGCTTTTTCTCAACGTGTCATTGCGCTCTCTTAAATCCCTTCCAAC
CCTTCTCCTTCAAATGACGGCCCCCTCCTTTACCCGGGGGCCCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAAGCAGGAGTGGGTGGG
TTGGGGAGCAGGGCGGGGGAAGTGCATAGAGAACTTTTGGGATAGCATTT
GAAATGTAAGTGAAGAAAATATCTATCCATCCATGGGAAGAGAGGCCCCT
TGGTCTTGCTAACTTTATATGTCTCAGTACAGGGAACGACAGGGCCAAGA
AGTGGGTTTTTTTGGGTAGGGGAGTGTCCCTCTCCTCTCTCTTGCCCTCT
CTCCCGTGTCCCCCGCCGCTTTTTCCTCCTTTCCCCGCCCCGCCGCCCCC
CGCGCCGCNGTTTTTTCTCCCCCCCCTCTTTGGGGTTGTGTCACATCCCT
TTTTTTCCTTTCCCCCCCCCCGTTTTTTTTTTGTTACTAATCCCTCTCCT
CTTTTTCTTTTTTTCTCCCCCTTGTCTCGCTCTTCTCTCCTTTTTTCTCC
TTCCGTTTCCCTCCATTCTCTCTATCTTTCTTTTCCCACTTTTCTCTTTC
TTCTTTTCCTCTCTCTCTTTTATCTCCATTATTTTATTCCTCCATCACTG
TTCATTCTCCTCCCTTTTATTCTATCTTTTGACACCCATCATCATTTTCT
CCTTCCTCTTCTTCTTCTTCTCCATTCTCACTCCTTCTCCTATTCACCTT
TATCTCTCCCGTCCTCTCCATCCCTCCCTCTTTCTCATCATCTCTTTCCT
TTTTCCCCCTTTTTTTCCCTTTCTTTTTCGTCTTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_g09.b1 MSMg01no400_g09.b1 CHROMAT_FILE:
MSMg01no400_g09.b1 PHD_FILE: MSMg01no400_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:42 2005
         (508 letters)



>mm_chr10_32145301_32146207
          Length = 907

 Score =  919 bits (475), Expect = 0.0
 Identities = 496/503 (98%), Gaps = 1/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaggcaattttcttctgccttttatcaaaagactcgtgatgattttcttagagaa 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaattcaggcaattttctt-tgccttttatcaaaagactcgtgatgattttcttagagaa 649

                                                                       
Query: 66  aaatcatcagggcaaataattagtagattgtagtattttatgccaaggctgcattttaat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaatcatcagggcaaataattagtagattgtagtattttatgccaaggctgcattttaat 589

                                                                       
Query: 126 tcactgatattgtgtgagttctgaatgcttttgcaggactgtgattgcacagagaattaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tcactgatattgtgtgagttctgaatgcttttgcaggactgtgattgcacagagaattaa 529

                                                                       
Query: 186 atttaaatggaccagtaactcatcagctcccgctaaacaaatgggagtggagaactgaca 245
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 528 atttaaatggaccagtaactcatcagctccctctaaacaaatgggagtggagaactgaca 469

                                                                       
Query: 246 ggagataacacctttgtgacccctaacttgcttgcacagttgtttgacttggcagagttt 305
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggagataacacctttatgacccctaacttgcttgcacagttgtttgacttggcagagttt 409

                                                                       
Query: 306 gactctagggtggaatctggggcttagattttcctttgaagtgaaatgtgaagagttagt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gactctagggtggaatctggggcttagattttcctttgaagtgaaatgtgaagagttagt 349

                                                                       
Query: 366 gaggaaaggaacaaaatccagacaaccggaaaatcagcacaacaataacaacagcaattc 425
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 348 gaggaaaggaacaaaatccagacaactggaaaatcagcacaacaataacaacagcaattc 289

                                                                       
Query: 426 cttctgggattaaaatgttttaagagctcttgtagggacctgcaagggatagaggagggg 485
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttctgagattaaaatgttttaagagctcttgtagggacctgcaagggatagaggagggg 229

                                  
Query: 486 gagagaaaaaaagagggcagcat 508
           |||||||||| || |||||||||
Sbjct: 228 gagagaaaaacagggggcagcat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space:   446706
Effective search space used:   446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)