BAC Information

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BAC

Clone NameMSMg01-401N14
Chromosome10 (Build37)
Map Location 129,730,512 - 129,731,085
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401N14.T7 (MSMg01no401_n14.b1)MSMg01-401N14.TJ (MSMg01no401_n14.g1)
ACCAG501136AG501137
length747744
length of high quality
(start - end)		454 (75 - 528)574 (79 - 652)
definitionCHROMAT_FILE: MSMg01no401_n14.b1 PHD_FILE: MSMg01no401_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:34 2005CHROMAT_FILE: MSMg01no401_n14.g1 PHD_FILE: MSMg01no401_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGATCCG
CGGAATTCCTGGATTTTCTGAGATAGGATCCTTTTGCATTTTGTATTTTC
TTTGACTGTTGTGTCGATGTTCTCTATGGAATCTTCTGCACCTGAGATTC
TCTCTTCCATTTCTTGTATTCTGTTGCTGATGCTCGCATCTATGTTTCCA
GATCTCTTTCCTAGGGTTTCTATCTCCAGCGTTGCCTCGCTTTGGGTTTT
TTTTATTGTGTCTACTTCCCTTTTTAGTTCTAGTATGGTTTTGTTCATTT
CCATCACCTGTTTGGATGTGTTTTCCTGTTTTTCTTTAAGGACTTCTACC
TGTTTGGTTGTGTTTTCCTGTTTTTCTTTAAGGACTTGTAACTCTTTAGC
AGTGTTCTCCTGTAATTCTTTAAGTGACTTATGAAAGTCCTTCTTGATGT
CCTCTATCATCATCATGAGAAATGTTTTTAAATCTGTGTCTAGATTTTCG
GTTGTGTTGGGGTGCCCAGGACTAGGTGGGGTGGTAGTGCTGCGTTCTGA
CGATGGTGAGTGGTCTTGATTTCTGTTAGTAGGATTCTTACGTTTGCCTT
TCCCCTCCTGGTAATCTCTGAAGCTAGCTGTTATAGTTGCCTCTTGTTAC
ATTTTGTTTTTTTTTTTTATTCTGTTACCCTCTATAAGCAAACCTGTTCA
TTCTTCTTCCTCTCCTTAATTTTATTGCCTACTACTATTCTTTCGTT

NNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCTCTGTGACACCCTGCC
CCCACTGCACCCCGTTTGCAGGCACACACTGGTCACTGGTCAGGATCCCT
TTGCTCCTTCCCTCCTCTATTGCTTGGTAATTGTATTCTCCACCTCCCAG
TGTCATGCTAATACAAGTTCCTGGCACAGCTGTCCAGATTAAATTAGAAT
GCAGACCAGCAGGCTGATTAATTATATTTTCTGGGTTAGAATTGTCTTCT
TCTATCTTTGGGGTACTGGTCCTATTTTGAATAAATGAGCAGTGCCAATA
TTTACTGAGGATATTTGACTCTTTTTGCCTGGGTGGTTTTGTCTTCCCAG
CCAATTTGGGCCCCTTGAATTAGATTAGGACCATATGAGAGAATATAGTT
TTACTCCAAGGAACTCCACACTCCCATCCAAACTCTGCTCAGTAGGGCCA
AACGGAGGATGACAGGGGACTTTTCCTTAAAAATAAGCCTCAACCACCGT
CTCCACATGTCCATCTGTTCTTATAAAGCAGTTTTTCTGTCACATGTCTG
TGCCTTCTTTCCTGCAGTAATCACTGTTGAATTCTTGTTCTGTCTTCCTC
AGNACTGNTGACTGTGTTTAGAACCTTACACTTATGAAGAAAGCACTATA
CTACTGAGTCACATTCTCTGTACTCGTTTAATTTTTTATTTGNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_n14.g1 MSMg01no401_n14.g1 CHROMAT_FILE:
MSMg01no401_n14.g1 PHD_FILE: MSMg01no401_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:34 2005
         (574 letters)



>mm_chr10_129730312_129731285
          Length = 974

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcctctgtgacaccctgcccccactgcaccccgtttgcaggcacacactggtcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcctcctctgtgacaccctgcccccactgcaccccgtttgcaggcacacactggtcactg 715

                                                                       
Query: 61  gtcaggatccctttgctccttccctcctctattgcttggtaattgtattctccacctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gtcaggatccctttgctccttccctcctctattgcttggtaattgtattctccacctccc 655

                                                                       
Query: 121 agtgtcatgctaatacaagttcctggcacagctgtccagattaaattagaatgcagacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtgtcatgctaatacaagttcctggcacagctgtccagattaaattagaatgcagacca 595

                                                                       
Query: 181 gcaggctgattaattatattttctgggttagaattgtcttcttctatctttggggtactg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcaggctgactaattatattttctgggttagaattgtcttcttctatctttggggtactg 535

                                                                       
Query: 241 gtcctattttgaataaatgagcagtgccaatatttactgaggatatttgactctttttgc 300
           |||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtccaataaagaataaatgagcagtgccaatatttactgaggatatttgactctttttgc 475

                                                                       
Query: 301 ctgggtggttttgtcttcccagccaatttgggccccttgaattagattaggaccatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgggtggttttgtcttcccagccaatttgggccccttgaattagattaggaccatatga 415

                                                                       
Query: 361 gagaatatagttttactccaaggaactccacactcccatccaaactctgctcagtagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gagaatatagttttactccaaggaactccacactcccatccaaactctgctcagtagggc 355

                                                                       
Query: 421 caaacggaggatgacaggggacttttccttaaaaataagcctcaaccaccgtctccacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caaacggaggatgacaggggacttttccttaaaaataagcctcaaccaccgtctccacat 295

                                                                       
Query: 481 gtccatctgttcttataaagcagtttttctgtcacatgtctgtgccttctttcctgcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtccatctgttcttataaagcagtttttctgtcacatgtctgtgccttctttcctgcagt 235

                                             
Query: 541 aatcactgttgaattcttgttctgtcttcctcag 574
            |||||||||||||||||||||||||||||||||
Sbjct: 234 gatcactgttgaattcttgttctgtcttcctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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