BAC Information

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BAC

Clone NameMSMg01-401O14
Chromosome10 (Build37)
Map Location 34,381,197 - 34,381,473
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O14.T7 (MSMg01no401_o14.b1)MSMg01-401O14.TJ (MSMg01no401_o14.g1)
ACCAG501184AG501185
length725722
length of high quality
(start - end)
277 (334 - 610)511 (77 - 587)
definitionCHROMAT_FILE: MSMg01no401_o14.b1 PHD_FILE: MSMg01no401_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:39 2005CHROMAT_FILE: MSMg01no401_o14.g1 PHD_FILE: MSMg01no401_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAG
GATCCGCGGAATTCAGAAGTACCAACAGACTATCTAATACAAACTTAACA
TTAGATAAAGTGTGTAAAAGCTATGGGACCTCATAATGACAACCTGAGAC
ACAGCCTCAGCTATAAGCTGCTCAGAGCCCCAAAATCCCTGGACCACAGG
AACCACGGGTATCCTTCTTGCAGAGACTTGGTATGGTAAAAGCAAGAAAA
CTACTATTTATCCCAATTAATTGTTTTACAGCAACACAAGAAAAACAGAA
GGAAAAACCAAAATTGCATTTTTATGTTAATTCGTTTTAGCAAGAGCAAA
AACACTAGGTAAGCTTTCTTTGGCTAAGAGTCTATGAAATATGGAGGAGC
CAAGAGTCAAAAAGCTTATGTATCGCTTCTCTTGAATTGAAGGTATTTCT
GAACATGAAGCTACAAAATTGAGAACATACTATAAAAGTATAACATTAGC
ACTTCACCATGAGAGTCAACTGGTTAAAACAGTATGTATTTGTCTGTAGT
TGCATCCACTGTAAAAGTCAGTGCTGAATTTTAGCATATCATACCATAGC
TGCTCAGACCACACCCTAGAAGTAGGACTGCAAAGGGCCTGCTGTGGAAT
CCCACTCTATTAATACTATTACAGACACCTCTCCCAGCCGCAGGGAACAC
TATGATAACTGCCAAGGGAGAACAA
CTTTTTCTCCGATGCTGTGGGTAGGCCTGGGGGCCGCCTGTTTCCCAACT
TTAGGTGACCTATAGATTTCCCGCGGAATTCCTGATCTTTCCAAAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTGG
CGAGAATTTTATTGAGGATTTTTGTATCGATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTT
TGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGG
TAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAG
ACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGAT
GNTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGGCCAGAAAT
TTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATACCCCTTTGTA
AAACGAACTGATGTTGGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o14.b1 MSMg01no401_o14.b1 CHROMAT_FILE:
MSMg01no401_o14.b1 PHD_FILE: MSMg01no401_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:39 2005
         (277 letters)



>mm_chr10_34380997_34381673
          Length = 677

 Score =  484 bits (250), Expect = e-141
 Identities = 271/278 (97%), Gaps = 2/278 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttagcaagagcaaaaacactaggtaagctttctttggctaagag-tctatgaaatat 59
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 477 gttttagcaagagcaaaaacactaggtaagctttctttggctaagagat-tataaaatat 419

                                                                       
Query: 60  ggaggagccaagagtcaaaaagcttatgtatcgcttctcttgaattgaaggtatttctga 119
           ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 418 ggaggagccaagagtcaaaaagcttatatattgtttctcttgaattgaaggtatttctga 359

                                                                       
Query: 120 acatgaagctacaaaattgagaacatactataaaagtataacattagcacttcaccatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acatgaagctacaaaattgagaacatactataaaagtataacattagcacttcaccatga 299

                                                                       
Query: 180 gagtcaactggttaaaacagtatgtatttgtctgtagttgcatccactgtaaaagtcagt 239
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 298 gagtcaactggttaaaacagtatgtatttgtctgtagttgcatcctctgtaaaagtcagt 239

                                                 
Query: 240 gctgaattttagcatatcataccatagctgctcagacc 277
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gctgaattttagcatatcataccatagctgctcagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)