BAC Information

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BAC

Clone NameMSMg01-402H04
Chromosome10 (Build37)
Map Location 25,675,773 - 25,676,018
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
Downstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H04.T7 (MSMg01no402_h04.b1)MSMg01-402H04.TJ (MSMg01no402_h04.g1)
ACCAG501593AG501594
length787786
length of high quality
(start - end)
246 (70 - 315)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no402_h04.b1 PHD_FILE: MSMg01no402_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:20 2005CHROMAT_FILE: MSMg01no402_h04.g1 PHD_FILE: MSMg01no402_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCGCGCGGAATC
TGGGCATCTATCATGAAGGGGGAGCGGCTGATACTAAAATCTGATTCAGT
ATCTGGTGCTTATACTGAAAGCTAATACTAAAATCAATTATTTCTTGATT
ATGTCAATAAAGACGACCGAAGCTAATCAATCGGCAAAGGTAAAGAGGTG
GGAATTCTAGGTGCCAGGAGGGAAGAGGAGGGAAAGACATAGAGAAATAG
CCAGACACCATGTAAAGTCTAGGGGGCCAACTAGAACCAGTGGTGGCCTC
TGCCACCAGCAGAATTCTATTTTGATAGCTGTTGAGTTTAGAGCAATAGA
TTCCACGCCCAGCAGTTGTGTTATCTGGATGGCTTAACATATTAAGGCTG
TCTGGTGTCTTCCATGCCTCAGGTGGGCAGGAGGAAGGGCACAGCCTCGG
TGCATTCCTTAGAGGTTTGGCAGAACTAGTCATGATAGATTGGAGGAAGG
ATTGAAGCTCACATGGGGTATATAACCAGCTGGCTCTTGGTGGAGCTATG
TCGGCAAAGGGACCAGCGGCAGCTTGTTATAGAGCCAAGCTGATAGCCTG
GCCTCTACAATGTGTTGGCATACTTTTTTTAAATTACATGCTTATACGCA
TGTCTATATTTACATTTCCGACTTTTGATTTAATGACCTCCACCCTCATT
AAAACATTCCTTTATTTTGAAAATTTTTTGGTCCTTTTCCCTAAAAATTT
TGCATTCCAAAGAACAATCCCTTGTATTCTTGTTAAN
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTCTTTTTTTCTTTCTTTTTTTTTTTTT
TTTTTTTTCCGNTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTC
CTGGAACTGAATCTCATTGGCTGTTTGTATGCTTTAGTTTTTAAGCAGAA
CTCTTAATTATGCATCTCAGAAATACCTGCAGAATATATTATTAATTTTA
ATTTTCTCACTTATTAATTTTTTCTGGAGTAAGAGCGGTCTAGGTTTCAA
CCTTCTCCCATTAATTATTTTTTTGGAAGACTTGGAAGATATTTAAAGTA
TGTTTAGAAAGCCCATAGTTTGGACAAAGGAAAAAAAAGCAATGTATTAC
TTTTAAAATCAAAGTTTCATACTTTTAAAGTAGTTGCTTGCTTTGAACAA
TTCTTTCCCTTCCTTAATTTCAATTTAGATCACCCAAAGGGTGGAATCAC
TTTGCATACTGGACTGTGAAGGGCTTTGATCCTTCTCTTGCACTGTGAGA
AATCTCTTCTGAGCCTTGAAGAAACCTTTTAATAGAGAGTCTTTACACTT
CTCTTAAGTTATCTTTTAATAGTCCTTCTTACACGGATTTTTTCCAAAAC
AATTTTTTCTGTTTTTCTTACTTCCCCATTTTTTTATTTCTTCACCAACC
CCATTTAATCTTCTCTTTCTACCTGGTGACACTTAATCCTTTTTTTCCCC
CTACGGGTGTAAACCCTCTGGTCATATTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h04.b1 MSMg01no402_h04.b1 CHROMAT_FILE:
MSMg01no402_h04.b1 PHD_FILE: MSMg01no402_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:20 2005
         (246 letters)



>mm_chr10_25675573_25676218
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagcggctgatactaaaatctgattcagtatctggtgcttatactgaaagctaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagcggctgatactaaaatctgattcagtatctggtgcttatactgaaagctaatact 260

                                                                       
Query: 61  aaaatcaattatttcttgattatgtcaataaagacgaccgaagctaatcaatcggcaaag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aaaatcaattatttcttgattatgtcaataaagtcgaccgaagctaatcaatcggcaaag 320

                                                                       
Query: 121 gtaaagaggtgggaattctaggtgccaggagggaagaggagggaaagacatagagaaata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gtaaagaggtgggaattctaggtgccaggagggaagaggagggaaagacatagagaaaga 380

                                                                       
Query: 181 gccagacaccatgtaaagtctagggggccaactagaaccagtggtggcctctgccaccag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gccagacaccatgtaaagtctagggggccaactagaaccagtggtggcttctgccaccag 440

                 
Query: 241 cagaat 246
           ||||||
Sbjct: 441 cagaat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)