BAC Information

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BAC

Clone NameMSMg01-402I16
Chromosome10 (Build37)
Map Location 113,825,798 - 113,825,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402I16.T7 (MSMg01no402_i16.b1)MSMg01-402I16.TJ (MSMg01no402_i16.g1)
ACCAG501664AG501665
length712742
length of high quality
(start - end)
331 (54 - 384)107 (152 - 258)
definitionCHROMAT_FILE: MSMg01no402_i16.b1 PHD_FILE: MSMg01no402_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:28 2005CHROMAT_FILE: MSMg01no402_i16.g1 PHD_FILE: MSMg01no402_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTATTATTATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATGATATTCTTAGGCAAATGGATAGAACTAGGAAATA
TCATCCTGAGTGATGTAACTCAATCACAAAAGAACACTCATGGTATGTAC
TCACTGATAAGTGAGTATTAGCCCAAAAGCTAGGAATACCCACAATACAA
TTCACAGACCACATGAAGCTGAAAAAGAAGGAAGACCGAAGTGTGGATAG
TTCAGTCCTTCTTAGAAGGGGAAAAAATACCCATGGGAGGAGATGCAGAG
ACAAAATGTGGAACAGAGACTGAAGCAAAGGCCATCCAGAGACTGCCCCA
CCTGGGGATCCATCCCATATACAGTCACCAAACACAGACACTATTATGGA
TGCCAAGACTTGACATACATGCTGACAGGAGCCCCATATAACTGTCTCCT
GAGATGCTCTGCCCGAGCCTGATTATACCAATTGTTGGGTTCAAGCCAAC
CATTGCTCTGAATGGGGTGGAACCCCCAGGAGTAATTTATGAAAATGGAC
CGTTAGGAATCTCGGGGTCTTATTGGGCAGCCCCCCTCTTTTTTTTTTCC
TCCCCTTTCTAATTTTTCTACGCTATTTTCTCTCTTTTTTCACTTCCCTC
ACTTTTTTTTACCCCCTCCACATGCTTTGACCTGATTTTTTCCCACATTC
TATTAGAGTTTN
CTCTTTTGCGAAGATATGGGACXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAATCAGATAAGAAC
AAACACTTGTGGGCTTTTCTCTGTCTTCCCACTCATTTGTATGGAGTGGC
ATCTATTACATCAGAGCCCTTCTTTGTCCTTCCTCCAGGACCTCCCAGCT
TCTTTTCTTGAACCCCTCCCATGTCCTCTCCTCAAGTTGGTAGACTTGCT
TTCATTTGATTATCATTATATTAATGCTATTGTATACATATATTTATGCG
CATGCATGCATTTACAGATATTTATATATATATATATATATAATACATAG
GAAATTGTAGTTGCAGTGCTAACATGTCCTCGATGCACTATTTATGTTAC
TCCATAAACGAATATACACATATAATGTTCTGAACTTCCATCATTCTTGC
GTTGCTAAAACTCACACTATTATTTTTATACATTTATTCATGCCTAAGTA
ACCTCTCCTCTCGCTTACACCCTTTATCATTTCCTCTTTCGTAAACCATG
GTCTCGTTATCTCTTTTTGTTGACTTAATATTAATCCCCCAATGCTGTCT
ACCTTCCCTCCTTTAGATTTTTTACCCTTATCCTTGCTCTCGTCCACGTT
TCCACATTTCAATCTTGTATTAATATATTTACTTCCCTCGTTCTTCTTAT
TTATTGCGTTTTCACCTCTCACTAGTCAATTCTCTATATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_i16.g1 MSMg01no402_i16.g1 CHROMAT_FILE:
MSMg01no402_i16.g1 PHD_FILE: MSMg01no402_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:28 2005
         (107 letters)



>mm_chr10_113825598_113826104
          Length = 507

 Score =  184 bits (95), Expect = 2e-51
 Identities = 104/107 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattacatcagagcccttctttgtccttcctccaggacctcccagcttcttttcttga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 tctattacatcagagcccttctttgtccttcctccaggacctcctagcttcttttcttga 248

                                                          
Query: 61  acccctcccatgtcctctcctcaagttggtagacttgctttcatttg 107
           |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 247 acccctcccatgtcctctcctcaagttggtagccttgttttcatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)