Query= MSMg01no402_l15.b1 MSMg01no402_l15.b1 CHROMAT_FILE:
MSMg01no402_l15.b1 PHD_FILE: MSMg01no402_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:43 2005
(520 letters)
>mm_chr10_51116087_51117003
Length = 917
Score = 913 bits (472), Expect = 0.0
Identities = 495/504 (98%), Gaps = 3/504 (0%)
Strand = Plus / Minus
Query: 17 gaattccatttctttctggtgaactgatagtgacactcactggtgtgtctctgccaaact 76
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattccatttctttttgttgaactgatagtgacactcactggtgtgtctctgccaaact 658
Query: 77 caaaatagaaatgaaaaatcctcatggtagtagcacctttatagtttccaatccttcctc 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caaaatagaaatgaaaaatcctcatggtagtagcacctttatagtttccaatccttcctc 598
Query: 137 acatgacttttaattagaactaatactacattaatcatctattaaaaaaccggtacagtt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acatgacttttaattagaactaatactacattaatcatctattaaaaaaccggtacagtt 538
Query: 197 atagatttctagatgcgatcacccctggaacttaataacatacactaaatgattaattat 256
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atagatttctagatgtgatcacccctggaacttaataacatacactaaatgattaattat 478
Query: 257 agcctctaatctctgaccaagcacatcccttcttgaaatgttcatgcatgtagatacttt 316
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agtctctaatctctgaccaagcacatcccttcttgaaatgttcatgcatgtagatacttt 418
Query: 317 ctgactctcttctgtacaccactgtcaccccccgtgccacattcatgttcactggctgaa 376
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgactctcttctgtataccactgtcaccccccgtgccacattcatgttcactggctgaa 358
Query: 377 aaatctaccaacgatccattatatacccagagaagtctctttctagcaaacaaaagcctt 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 357 aaatctaccaacgatccattatatacccagagaagtctctttctagcaaacaaaagccct 298
Query: 437 tctaatcacctaactacttccagtagaaataccctgtctctcaaactcttcactatgtgc 496
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 297 tctaatcacctaactacttccagta---ataccctgtctctcaaactcttcactatgtgc 241
Query: 497 cactctaggccatattttcttgtg 520
||||||||||||||||||||||||
Sbjct: 240 cactctaggccatattttcttgtg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 917
Length adjustment: 10
Effective length of query: 510
Effective length of database: 907
Effective search space: 462570
Effective search space used: 462570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_l15.g1 MSMg01no402_l15.g1 CHROMAT_FILE:
MSMg01no402_l15.g1 PHD_FILE: MSMg01no402_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:43 2005
(539 letters)
>mm_chr10_50952680_50953617
Length = 938
Score = 988 bits (511), Expect = 0.0
Identities = 529/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 tctgttcacaaaagggaagaggggtgttcagacacaaacatcctgggtttgacttcagtc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttcacaaaaggggagaggggtgttcagacacaaacatcctgggtttgacttcagtc 260
Query: 61 cttgcttcactttgccagcataggcacactctgcttcactctatgcacaccctatgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcttcactttgccagcataggcacactctgcttcactctatgcacaccctatgcttc 320
Query: 121 accagccaagtcattgctttgtataaccatgggaagtcaactatgtggttgttgatgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagccaagtcattgctttgtataaccatgggaagtcaactatgtggttgttgatgggc 380
Query: 181 tccagcaagccatctcaccagctttcccatgatgaactaataagcatgtcagtaaactct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagcaagccatctcaccggctttcccatgatgaactaataagcatgtcagtaaactct 440
Query: 241 catgttcctcagcacccatctctcagaacaagtggtagccaatccattgtgagtgttgct 300
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggc-cctcagcacccatctctcagaacaagtggtagccaatccattgtgagtgttgct 499
Query: 301 ttcattttgaagtttaagacaagttatggtcttggaaagatcaggctaattttgatatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcattttgaagtttaagacaagttatggtcttggaaagatcaggctaattttgatatct 559
Query: 361 ctggaaatttcttacttaacctagtttttactggacttctatttgatgacatgaatgatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggaaatttcttacttaacctagtttttactggacttctatttgatgacatgaatgatc 619
Query: 421 aatttaacagcagcaagatggcaagcaaaaagccggagttgggtcatccagtgttgggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatttaacagcagcaagatggcaagcaaaaagccggagttgggtcatccagtgttgggcc 679
Query: 481 atccaggaagcaaacatggaagcaaatgcatataattaagtaaatgttaaagagc 535
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atccagggagcaaacatggaagcaaatgcatataattaagtaaatgttaaagagc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
