BAC Information

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BAC

Clone NameMSMg01-402M16
Chromosome10 (Build37)
Map Location 100,543,719 - 100,544,157
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402M16.T7 (MSMg01no402_m16.b1)MSMg01-402M16.TJ (MSMg01no402_m16.g1)
ACCAG501856AG501857
length739732
length of high quality
(start - end)
439 (72 - 510)447 (76 - 522)
definitionCHROMAT_FILE: MSMg01no402_m16.b1 PHD_FILE: MSMg01no402_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:49 2005CHROMAT_FILE: MSMg01no402_m16.g1 PHD_FILE: MSMg01no402_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGAGAGGATCCGC
GGAATTCCTTGATTCTCTGGAACACTTTAGAAATTGGAGGAAATCGTTGC
TATAAGTGACAAGCCAAGATTCATTGGCTGAATGATTCCAAGCTCACAAA
GGGACTTCTCTCACCAGCTTCTCAGCAATGTCAGCATCAACTAAGCACAT
GAAGTGTCTTCTCTCAGTTTACCGTGGTGCCACTCCGTCACGCTGTGAGG
TAGCACAGAGATTTGATATAAATAGCAGAGATGAGGTTGTGCATAACGGA
TCCTTAGGAACAGTTAGGAGTATCCTCCACCCTAGAAAGAAGCAGAAAAC
TATGTGTTGTCAAAAGTATCACAGAGTTTGAAGACAGATGAAACCATTTA
AAGTTCAGGCTTGTATACTTGCCCTTGGAAGGAAGGTAATAGGTGTTGCC
CAAGTTCTGCTTCACTTCCTTGCTGAAGAAACTTTAATGTGGATACAACC
CACATGAAAAGGTATCTGGTAATGATTTCAAAGTTTTGAGTTGAGATCAT
ATCTAAAGAGTTTGTAAATAATTATACAATATAAGACATATAAAGTGAGT
ATTTTAACTTACGCAGAGGATAAGAAGGTCTTTTATTCTTCAAGTTTCAG
CATCACTGAATAATTTTAAGAAGCTAGATTAATTGCGGGCAAATTTGCCT
AGCGACCATTCAGTTATTCTGGTTTCCAGCTGACATGCG
AACGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGCTAAAACCATCTGGCCCTGAG
CTTTTTAGTGATAAGAGACTTCTAATGACTGTTTCCATTTCATTAGAAAT
CTATTTAAGTTGTTCATGTCATCTTAATTTAAGTTTTGCAAGTGTAAAAA
TTATTGAGAGAATTACTGTTGAGAGAATTATTCATTTTTTTTAGATTTTC
CAATTTGGTAGAGTACCGTTTTTCAAGGTATGTCCTTATTTTCCTCTGGA
TTTTCTCCTTGTCTTTTGTAGTATCTACCTTTCCATTTCTGATTTTGTTA
GTTTGGATATTCTCTTTGCCTTGTAGTTAGTACGGATAATGGTTTGTCTT
TCTTGTTGATTTTCTCAAGGAACAAACTTTTTGTTTCATTGATTCTTTGT
ATTGCTTATTTTGTTGCTGTTTAATTAATTTCAGCCCCGATAGTGGGCAT
ACTTTTTGCCATCTCTTTTTGAGTGNATTTACTTCCTCTCTCTCTCTCTC
TCTCTCTCTGATGAAGGCACTCAGTATAGTATGGTTAACTTGTGATGAAT
TTGAAAGCTTTCTGTTGATTTTGTTATTGGTGAAGAAAAGCACGTTTTAA
TTGGGGGGGTCTATTTTGCTTGTCATGATTATTTCCATAACTTTACCCTT
GAGATTTGTCATTCCTTGGTGGTCATCGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_m16.b1 MSMg01no402_m16.b1 CHROMAT_FILE:
MSMg01no402_m16.b1 PHD_FILE: MSMg01no402_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:49 2005
         (439 letters)



>mm_chr10_100543519_100544357
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactttagaaattggaggaaatcgttgctataagtgacaagccaagattcattggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactttagaaattggaggaaatcgttgctataagtgacaagccaagattcattggctga 260

                                                                       
Query: 61  atgattccaagctcacaaagggacttctctcaccagcttctcagcaatgtcagcatcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattccaagctcacaaagggacttctctcaccagcttctcagcaatgtcagcatcaac 320

                                                                       
Query: 121 taagcacatgaagtgtcttctctcagtttaccgtggtgccactccgtcacgctgtgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcacatgaagtgtcttctctcagtttaccgtggtgccactccgtcacgctgtgaggt 380

                                                                       
Query: 181 agcacagagatttgatataaatagcagagatgaggttgtgcataacggatccttaggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacagagatttgatataaatagcagagatgaggttgtgcataacggatccttaggaac 440

                                                                       
Query: 241 agttaggagtatcctccaccctagaaagaagcagaaaactatgtgttgtcaaaagtatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaggagtatcctccaccctagaaagaagcagaaaactatgtgttgtcaaaagtatca 500

                                                                       
Query: 301 cagagtttgaagacagatgaaaccatttaaagttcaggcttgtatacttgcccttggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagtttgaagacagatgaaaccatttaaagttcaggcttgtatacttgcccttggaag 560

                                                                       
Query: 361 gaaggtaataggtgttgcccaagttctgcttcacttccttgctgaagaaactttaatgtg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggtaagaggtgttgcccaagttctgcttcacttccttgctgaagaaactttaatgtg 620

                              
Query: 421 gatacaacccacatgaaaa 439
           |||||||||||||||||||
Sbjct: 621 gatacaacccacatgaaaa 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)