BAC Information

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BAC

Clone NameMSMg01-402O18
Chromosome10 (Build37)
Map Location 68,409,555 - 68,409,797
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O18.T7 (MSMg01no402_o18.b1)MSMg01-402O18.TJ (MSMg01no402_o18.g1)
ACCAG501955AG501956
length766789
length of high quality
(start - end)
270 (49 - 318)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no402_o18.b1 PHD_FILE: MSMg01no402_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005CHROMAT_FILE: MSMg01no402_o18.g1 PHD_FILE: MSMg01no402_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGATCTTCACCTTCTGCCTTGTCAATAAATGCTGATCATCCA
ATGGCTGGGTAGAAGAGAGAATAGGGCTGAAACTTCCACCTGCCAGGTGA
GAGAAAGAAAGGGAGAGGGAGAGAGGGAGAAAGTGAGAGAGGGAGAGATC
AAAACGTGATAAGGAGGGTCTGAGAAGATACCATGGGAAGAAATATCTGA
AGAGCCTGATCAATAATTGCCCTGATATTGTGATAAAAGCTTATAAATAA
ATCTTGAGTTCTCTGTGTGCTTATCATGGACAAGCAAAACTAAAGAAATA
CAGCTACCGAATCAATCCACTGTTTACACTCATATTAAAATAATTAATTT
TACATTCACCTTACACCAGGGCACCAGCATTCTCACTAGCTGAGGGCCAG
CTGATATTTTGCTTTTCTGTTTTGGCAGTTCTTGTACAGGAAGGTTGGGA
GCTTCCCCTCATATACCTGCGCTGTTTTATCATATGTTTACGTACCGCCG
TCTTTATATGTTATTTATTTCCCTCTCCGTTGTGTCTCTAATGTCCCTCG
CCTGTTTCCTTATTCGGATGCAATTTCTATCTCCCCAGTTTCTCATTATT
TTTTTCTCCCCCCTTTGTTTTATTCAAACCCGCCACCTTTGTCCCTCTCT
ATTCCCCTCCGTCTTTAGCCCATCTATCCTTCATTCTCTTGTTATTTTCC
CCTATCTCCCCCGGTT
NTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGGTAAAAACTAAATATCTATG
ACCAATGAGAACTTCTCATGTACACTGTTAAAGTCTTGGGAAATTTTGAA
ATTCTATTTAAAATTCTGTCCTTATAATTGTAATTAAGTTATCACTCCAA
GGTGGATCTTTGAATGGGGTGGCTTTTTTTATTCAACTCTCTCTCTCTTT
CTCTCTCTCCCTCTCTCTCTCCCTCTCCCTCTCTCGCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTTTTTCTCTCTCTCNCTCTCTCTCTCTCTGTGTG
TGTGTGTGTGTGTGTGTTTGTGTTGTGTGTGAGCTTTTAACCACTTTTTT
CCCTTCAATCCCATTTTCCTATCTTCTCTATTTGTTAAACTTTTTTATTT
TTTTTTCTTTCCTATTTCTTCTTTATTATTATATCTTCCGCTTTTTACTT
TTTTTCTTTCTTTTTTTCAATTATTTATTTTCTTCACTCTTACCTATTCA
CCTTCTTTTTTTACTTGTTCCATTTTATTTTTTTACTTTTTTCTTTTTCT
CATTTTATTCCTTCTTTTTTTCTTCCCCCTCTCTTCTTATCTCTTTATCT
TATTATTTTTTTTCATCTAGTAACCTTTCTTTTCTTCATCGAATCCTATT
ATTTTTAACCCTCTTCCTCATTTCTTCTTCCCCTCACTTTCTTATTATGT
TATCCTTTCTATTTCAATTATTTAATTTTCTCCTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o18.g1 MSMg01no402_o18.g1 CHROMAT_FILE:
MSMg01no402_o18.g1 PHD_FILE: MSMg01no402_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:00 2005
         (240 letters)



>mm_chr10_68409355_68409994
          Length = 640

 Score =  385 bits (199), Expect = e-111
 Identities = 231/243 (95%), Gaps = 3/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggtaaaaactaaatatctatgaccaatgagaacttctcatgtacactgttaaagtc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agaaggtaaaaactaaatatctatgaccaatgagaacttctcgtgtacactgttaaagtc 260

                                                                       
Query: 61  ttgggaaattttgaaattctatttaaaattctgtccttataattgtaattaagttatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggaaattttgaaattctatttaaaattctgtccttataattgtaattaagttatcac 320

                                                                       
Query: 121 tccaaggtggatctttgaatggggtggctttttttattcaactctctctctctttctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tccaaggtggatctttgaatggggtggctttttttattcaactctctctctctttctctt 380

                                                                       
Query: 181 tctccctctctctctccctctccctctctcgc---ctctctctctctctctctctctctc 237
           |||| |||||||||||  |||| ||||||| |   ||||||||||| ||||| |||||||
Sbjct: 381 tctctctctctctctctttctctctctctctctttctctctctctccctctccctctctc 440

              
Query: 238 tct 240
           |||
Sbjct: 441 tct 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)