BAC Information

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BAC

Clone NameMSMg01-403B11
Chromosome10 (Build37)
Map Location 47,937,730 - 47,938,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B11.T7 (MSMg01no403_b11.b1)MSMg01-403B11.TJ (MSMg01no403_b11.g1)
ACCAG502084AG502085
length743737
length of high quality
(start - end)
434 (61 - 494)310 (317 - 626)
definitionCHROMAT_FILE: MSMg01no403_b11.b1 PHD_FILE: MSMg01no403_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:15 2005CHROMAT_FILE: MSMg01no403_b11.g1 PHD_FILE: MSMg01no403_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGTTGTCAGCTTCAAGGTCTTCTTAGGGCATTGCAACACTGGCAAAA
GCTTAGCTATATCAGAATTCAATCTTAAAAGGCACTTATAATAAGATAAT
ATTAAAGGAGAGTGCGTGGATCCATAAACCAGACTAACTCGTGGATAGGG
TATGAGTATACTGGTTAATGAGAATGCCAAAGCTCCAGGAGGTGAGATTC
TGAGAAACTCTTTGCCTCATGAGTGCTTCCAGGCCTCACGGCCTGCCTAG
CAAACTTCACTGGAGTTTGTGTAGCATTTCCCCCTTTCTTTTTTTATTTT
TCAGCCCCAGTTTCAGGATGCCCAGCCTCATCTTAGCTATAGATCTCAAA
AGTGCTTTTAAGATGAGTGGAAACACAACGATTTACTAATAAAATAGTGG
TAATAATAATAGCAACTAGGATAATATATTGAACCCAATCCAGGGGATTC
AATGCACTTAGGTTATTTTTTTTAATGCCTGGCCAATTCATCAATTTTCC
AAGTGTCCAAGTGACTATTGCTAATATCTGAAATTTCTGCCTTTTTATCC
TTAATATATGCTAGGTCCTGCCCTATTGTTAAGACTACTATTTCTAAGAC
ATTACCCTTTGCCTCCTATTCTTACATGGCTCTGTGGAATGTACCTCTGT
CTAGATTGAATTGATTCCTAGATCGGGTTGCCCGTCTAGACTG
GCATTCGCGAGNNTGGNGGGCGCCTTTTCAACAAATTTAGGNGAACNATA
GAATGCACAAAGAATTCCAGAGAAAATATTATTCACTGAACTCACTTCCT
CTTAGTACTGTCTGAGAAAAATAAAAGCACATTAGTATTCTGTCATTTTA
CTTTAACATACTTAAAATTGTTTCTATGTATTTTCTTTCAGATTTCACAA
TAATTGAAAGTAAAAACAAATGGGAACAAAAATGGGTAAAGTGAAGAACT
TGCCAAATGGGGCAATAGTAAATGGAATAAATCTCCCAAACCTGTTAACA
CAGTATTCTGTTTTTTAGCAAAATAGAAACCCATTGATCCACTTTTGCAT
TTTCTGAAATTTAAGCATTTGGTGAGATAAGTAGCAGCTACAAGGTTAAG
TGGAAATACACATAAACAGTGACATAGCTGTATCACAACACGAACAACTC
CAGGAAGTGCTGTATAGTGGACAGTGCCTGTGTTGCTGTAGTACCTGCCT
GTGTGAATTCTAAGCCTAATATCAGAGCATAAGTAATACAGAGCAAACCT
CCTTACCTGAATCATTACCTTTTTGATCTGGCATTGTTAAAACCAGCAGT
ACCTTTTCATTACCCATTTTCTTATCAGTATACAATTCTATATTCCATAT
CACCATTTATAACTAACCAGTATAAAATGTTTAAGAACTTAATTTTTCCA
TTACTTTTGAAATGTGATATTGAAAACTATTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b11.g1 MSMg01no403_b11.g1 CHROMAT_FILE:
MSMg01no403_b11.g1 PHD_FILE: MSMg01no403_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:15 2005
         (310 letters)



>mm_chr10_47937530_47938240
          Length = 711

 Score =  509 bits (263), Expect = e-148
 Identities = 299/311 (96%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaaaatagaaacccattgatccacttttgcattttctgaaattt-aagcatttggtga 59
           |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 201 agcaaaatagaatcccattgatccacttttgcattttctgaaatttaaagcatttgatga 260

                                                                       
Query: 60  gataagtagcagctacaaggttaagtggaaatacacataaacagtgacatagctgtatca 119
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gataagtagcagctacaaggttaagtggaaatacatataaacagtgacatagctgtatca 320

                                                                       
Query: 120 caacacgaacaactccaggaagtgctgtatagtggacagtgcctgtgttgctgtagtacc 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaggaacaactccaggaagtgctgtatagtggacagtgcctgtgttgctgtagtacc 380

                                                                       
Query: 180 tgcctgtgtgaattctaagcctaatatcagagcataagtaatacagagcaaacctcctta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgcctgtgtgaattctaagcctaatatcagagcataagtaatacagagcaaaactcctta 440

                                                                       
Query: 240 cctgaatcattacctttttgatctggcattgttaaaaccagcagtaccttttcattaccc 299
           |||||||||||||||||||||||||| ||  |||||||||||||||||||| | |||| |
Sbjct: 441 cctgaatcattacctttttgatctggtatcattaaaaccagcagtacctttcctttacac 500

                      
Query: 300 attttcttatc 310
           |||||||||||
Sbjct: 501 attttcttatc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 711
Length adjustment: 9
Effective length of query: 301
Effective length of database: 702
Effective search space:   211302
Effective search space used:   211302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)