BAC Information

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BAC

Clone NameMSMg01-403J04
Chromosome10 (Build37)
Map Location 73,574,591 - 73,574,954
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403J04.T7 (MSMg01no403_j04.b1)MSMg01-403J04.TJ (MSMg01no403_j04.g1)
ACCAG502452AG502453
length614740
length of high quality
(start - end)
---364 (79 - 442)
definitionCHROMAT_FILE: MSMg01no403_j04.b1 PHD_FILE: MSMg01no403_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:55 2005CHROMAT_FILE: MSMg01no403_j04.g1 PHD_FILE: MSMg01no403_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGN
GAAATTTCCTGCGTATCCCTTATTTCCAAANCCAATTTTTTTTTTTTTAA
AAAAAAATAACATCCCCCCCCTGGGGCGGGGGGGCTGCTTCATCCCTTCC
CTCTTTTCTTTTACAAAAAAAAAAANTTNNNNNTTTCCTGATATGCACTC
TGAACTTCTCTTCAGTGTAATACTTGCCCTTTAAGNGNNTTTNATACCAG
GGNAAAAAAAATTTTGGGAAAAAACTCCACTTTTTTTCCAAAAAATGGGG
GCATTTTGAAAAAAACCCTTTTTCCCTTTTTTTATTAAAGAATTTTTCCC
CCCAAATTTTCCACCCTTTTTTAAAAAAAGGTTCTTTTTTTAAAAAAACC
CCTCCCGCCTTTTTTTAAAAATTTTTTTTTTTTCCCCCTCCAAAAAAATT
TTTTGGGGGCCCTTTTTTCCCCCCCGGGGGGTTTTTTTTCCCACCCCCCC
CCCTGCCCTTTTTCTCTCCAAAAAAAAGAGGGCGTCCAAAAATATCTCTT
CCCCCCCCCCCCCTATAAGAGAGAACCCCCTCTGGCGGGGTTCCCCTCTC
TTTTTTCGGTGGGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGATATAAAGTGAAAAAA
TAGTGTCAAGATCATTACCATATAGATTCTCTGTTGCTTTCTTTATAGAG
TGCTACTGGATTTTTGATAGTCTGAATTCATTAATAAATAATATCTTCTG
AGAGTATGTCCAGGAAGAAGAATTAGTGGGACTTTGGGTTCAGGTTCCAT
AGGAAGGTTTACATATTTGTGTACTTGACAGACACAAGACACTTCCTCAG
GAGAGGCTGCAACCGATCTTAGAGCTCTGTAAAGTGCATTCTGAGCTAAC
GGCAGAGAAGAGTAATAAGCTGAAGAAAATCAGAGGATCCTAGCTCATGA
GGACTCTAAACAGTTGAACAAGATAGACGGACATGTAATTCAAGGGATTT
CAATAGTGGGACTCAGAAAGTCGTTGTTCAGCCTCAGACCTAGTAACAAG
AGGACAAATTTGATTACGAAAATTAGAAGAAAGAAATTATCTTCTTCTAG
AAAGAGAATTTTACCGTTATAAGCCAGTAGAATATTAACTCTTGCGGGTT
ATTTAGACCAGGGTAGCTGTACCTGCTCTCGACATTTGCCTCCTCGCCGC
CATATCGACCAAACATTTCCCTCTGGTTTTGTTTTCTCCTCCCTCCCTCG
TGGGGTTCTTCCTCAGCCCCAAAGCCGCCTTTTGTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_j04.g1 MSMg01no403_j04.g1 CHROMAT_FILE:
MSMg01no403_j04.g1 PHD_FILE: MSMg01no403_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:55 2005
         (364 letters)



>mm_chr10_73574391_73575154
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgatataaagtgaaaaaatagtgtcaagatcattaccatatagattctctgttgct 60
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 201 tttctgatataaagtgaaaaaatagtgtcaaaatcattatcatatagattctctgttgct 260

                                                                       
Query: 61  ttctttatagagtgctactggatttttgatagtctgaattcattaataaataatatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttatagagtgctactggatttttgatagtctgaattcattaataaataatatcttc 320

                                                                       
Query: 121 tgagagtatgtccaggaagaagaattagtgggactttgggttcaggttccataggaaggt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagtatgtccaggaaaaagaattagtgggactttgggttcaggttccataggaaggt 380

                                                                       
Query: 181 ttacatatttgtgtacttgacagacacaagacacttcctcaggagaggctgcaaccgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacatatttgtgtacttgacagacacaagacacttcctcaggagaggctgcaaccgatc 440

                                                                       
Query: 241 ttagagctctgtaaagtgcattctgagctaacggcagagaagagtaataagctgaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagagctctgtaaagtgcattctgagctaacggcagagaagagtaataagctgaagaaa 500

                                                                       
Query: 301 atcagaggatcctagctcatgaggactctaaacagttgaacaagatagacggacatgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagaggatcctagctcatgaggactctaaacagttgaacaagatagacggacatgtaa 560

               
Query: 361 ttca 364
           ||||
Sbjct: 561 ttca 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)