BAC Information

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BAC

Clone NameMSMg01-403K03
Chromosome10 (Build37)
Map Location 73,638,882 - 73,639,497
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403K03.T7 (MSMg01no403_k03.b1)MSMg01-403K03.TJ (MSMg01no403_k03.g1)
ACCAG502498AG502499
length776742
length of high quality
(start - end)
253 (59 - 311)616 (72 - 687)
definitionCHROMAT_FILE: MSMg01no403_k03.b1 PHD_FILE: MSMg01no403_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:59 2005CHROMAT_FILE: MSMg01no403_k03.g1 PHD_FILE: MSMg01no403_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGTG
TTGCCAGCTCAAGGAACCCCTATAAAAAGCTGGGCACAGTGTTATAAGCT
TATATGTTTTCATTTGGCACTCCTGTGCTAGGGGTACTGAGACAGACAGA
TCCTTAGGACTCACTGGCACCCATCTTAATCTGAAATCTTAGTTCCCAAT
GAGAGACTTTGTCTCAGAAAACAAGGTGGATGGCTCCTGAGCCAAGGCCT
GTGGTTGACCTCTGTCCTGCACTGTGTACTTATGTTCACGTACACAGATA
CACACAAAATTGTTTTTACACACATACACACAGAAGAATAAAATAGAAAC
CAAAACAAAAAAATAGTGGATAAACTATCAGGAATATCAGAAACACCAAA
AGACCTTGAAATCCAGATACGGAAGCGGTGACCAAAGTAATTGAATGAAC
ATAGATAAATGTGTTTTAATTCCAGACGATTGTGGTTGTGATTTGTGGTA
GAGGCTCAGGCCAGGCTATAGGTTCAAATTCCTAAGTTTAAAAGCAAAGA
AAGGAACAAAGCAAGCAAATAAAAATAATTCTGGAATGATTAAATCAATT
TATTTATTCTTANAACTGAGGATCAGGTCTAGAGAGAGTGGGAAATGGAC
TTCTCTTTTCTAAAGCCATGGGCAGCTTAAAGCGGGGATCATCCAGGTTT
TGTTAGATCCACAGTGGTCAAACCTATGGTCTCAATTGAACTAATTTCCT
GTGCCCTTCAATGTATTTATCCACAC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATCCCCTTTGGGGTTCAAAAACCTTCC
TCCTATTTTTCTATAAGAGTTTTTTAAGCTCCATCTACTGTATGGCTTTC
TGACTCCTTGATCTGTCTGAGTTAGTTGCTGGGTGGACCCTCTCAGGTCT
GCAAGCATGACAGAGTATCATTAATATTGTCAGAGATTGTTACTTGTCCA
TGGTATGGGTCTCAAGTTGGACCAGTTATCTGTTGACTATTCCCTCAGTC
TCTGCTTCATTCCTTGTACCTGCATTTCTTGTAGACAGGATACATTTGGG
ACTGAAAATATTATGGGTAAGTCAGTGTCTCTATTGCTCCAAGTAGCTCT
TCTTAACAATACTTCTTGTGAACAATTTCTACTAATAAATGTGGAGCAAG
GTTTGAGTGCTTGCTTATCACATCCAGATTTTATTTATTATGATGCTTCC
CAGCATATGTATATAAACATGCAGATAGATGTATACATTTTATAATATAT
TAAATTCTACTTAACTTAGTATGTATCTCTATTCTGAAAGTAAATATTGA
CGAGACACACATTATTATTAAGGAGCTTATTATTGTGAACAAAAACCAAA
CTCTACTTTCTTGTTNAACATGGATTATTTGCCAGAAATATAATTCTGGC
GGTTGAAGCCAAATAATTTGGCTCATTCCTTTTATGAATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_k03.g1 MSMg01no403_k03.g1 CHROMAT_FILE:
MSMg01no403_k03.g1 PHD_FILE: MSMg01no403_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:59 2005
         (616 letters)



>mm_chr10_73638682_73639697
          Length = 1016

 Score = 1123 bits (581), Expect = 0.0
 Identities = 607/616 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcccctttggggttcaaaaaccttcctcctatttttctataagagttttttaagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctatcccctttggggttcaaaaaccttcctcctatttttctataatagttttttaagctc 260

                                                                       
Query: 61  catctactgtatggctttctgactccttgatctgtctgagttagttgctgggtggaccct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctactgtgtggctttctgactccttgatctgtctgagttagttgctgggtggaccct 320

                                                                       
Query: 121 ctcaggtctgcaagcatgacagagtatcattaatattgtcagagattgttacttgtccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaggtctgcaagcatgacagagtatcattaatattgtcagagattgttacttgtccat 380

                                                                       
Query: 181 ggtatgggtctcaagttggaccagttatctgttgactattccctcagtctctgcttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatgggtctcaagttggaccagttatctgttgactattccctcagtctctgcttcatt 440

                                                                       
Query: 241 ccttgtacctgcatttcttgtagacaggatacatttgggactgaaaatattatgggtaag 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagtacctgcatttcttgtagacaggatacatttgggactgaaaatattatgggtaag 500

                                                                       
Query: 301 tcagtgtctctattgctccaagtagctcttcttaacaatacttcttgtgaacaatttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtgtctctattgctccaagtagctcttcttaacaatacttcttgtgaacaatttcta 560

                                                                       
Query: 361 ctaataaatgtggagcaaggtttgagtgcttgcttatcacatccagattttatttattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaataaatgtggagcaaggtttgagtgcttgcttatcacatccagattttatttattat 620

                                                                       
Query: 421 gatgcttcccagcatatgtatataaacatgcagatagatgtatacattttataatatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgcttcccagcatatgtatataaacatgcagatagatgtatacattttataatatatt 680

                                                                       
Query: 481 aaattctacttaacttagtatgtatctctattctgaaagtaaatattgacgagacacaca 540
           |||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||
Sbjct: 681 aaattctacttaacttagtatgtatctctattcaaaaagtaaatattgacaaaacacaca 740

                                                                       
Query: 541 ttattattaaggagcttattattgtgaacaaaaaccaaactctactttcttgttnaacat 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 ttattattaaggagcttattattgtgaacaaaaaccaaactctactttcttgttaaacat 800

                           
Query: 601 ggattatttgccagaa 616
           ||||||||||||||||
Sbjct: 801 ggattatttgccagaa 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)