BAC Information

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BAC

Clone NameMSMg01-403M16
Chromosome10 (Build37)
Map Location 97,793,702 - 97,794,019
singlet/doubletsinglet
Overlap geneEG667438
Upstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403M16.T7 (MSMg01no403_m16.b1)MSMg01-403M16.TJ (MSMg01no403_m16.g1)
ACCAG502619AG502620
length800770
length of high quality
(start - end)
319 (65 - 383)303 (70 - 372)
definitionCHROMAT_FILE: MSMg01no403_m16.b1 PHD_FILE: MSMg01no403_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:12 2005CHROMAT_FILE: MSMg01no403_m16.g1 PHD_FILE: MSMg01no403_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTCTTTCGCGNATTATGTTTCTTTGAAGTATTTTGTTGTTTTTCTTATA
GAACACAATTAAATTTTAATTTGAGCACGTAGAAATATACTTAACATTTT
AAGTTTGTTAACTTTTGATAATTTCATATTGCATTCAATGAGCTGTGATT
ATAATAGTCTCCCCTTGGGACTCCATCTTATCACCTCTCAGCTCCGAGGA
CCACATTCTTCCAACTTTTTACCCTCACAATCCATCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCGCCATCTTTTTTTT
TTCTTTCCTTCTACCCCTTTCCATTCTCTACTCCCCTTCCCCCTTCCCCC
CCTTTCTCGTTCTTTTCTTCCTCCTTTTCCCCCCTTTCCCCCCTCTTTTC
TTCTCTTCTTCCCCACCCCTTTTTTTCCTTCCCTTCCACCTTTTTTTTTT
CCTCCCTTTCCCTCCCCTTCTTTTTTTTTTTCCCCCCCCTCTTATTTTTT
TCCCCCTCCCCTCCTTTTTCCCTTTTCCCCACTTTTTTTCTCTCCCCCCC
CCCCCTTCTTCTTTTTCTTCCCCCACCCCCTTTTCCCCCCCTTATCCTTA
TTTTTCTTCCTTCTTCCCCTCTTTTTCTTCCATTTTCCTTCCCCCCTTTT
TTTTTCCCCTCACTTCTCTCATCCTATTTTCCGCTTTTTCTCCTTTACTN

AATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGGTTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTT
CGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGCGAGAATTCTGG
CATCGATATTCATATTAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGA
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAATATGAGTT
GGGTACAGTACTTTCTATTTCTATCTTGTGAAAAAGTTTGTGCAGAACTG
CAATTATATCTTCTTTGAACGTCCGATAGAACTCTGCTTTATACTCCTTT
GGTTTTGCCCTTTTTTTGCCTGGCCTACTCCTTATAATTGTTCCCCCTTT
TTTCCCTCTTTTTGTTACCTTTTTATACCTCTCCCCTCGCCCCCTCCTCC
TTCTTCTCTCTTGTTTTTTCCTCTCCCACCTTCTTTCTTTTTTTTCTTTC
CTTTTCCTTTTCCCTTTTTTTTTTCCTTTTTCCTTCCCGTTTCCTCCCTT
CCTTTTTTTTTTTTTCCCCCTTTTTTCCTTCCCCCCCTCCTTTCCAACCT
CTTTTCCTATTTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_m16.b1 MSMg01no403_m16.b1 CHROMAT_FILE:
MSMg01no403_m16.b1 PHD_FILE: MSMg01no403_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:12 2005
         (319 letters)



>mm_chr10_97793604_97794322
          Length = 719

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtttctttgaagtattttgttgtttttcttatagaacacaattaaattttaatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tatgtttctttgaagtattttgttgtttttcttatagaacacaattaaattttaatttga 357

                                                                       
Query: 61  gcacgtagaaatatacttaacattttaagtttgttaacttttgataatttcatattgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcacgtagaaatatacttaacattttaagtttgttaacttttgataatttcatattgcat 297

                                                                       
Query: 121 tcaatgagctgtgattataatagtctccccttgggactccatcttatcacctctcagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcaatgagctgtgattataatagtctccccttgggactccatcttatcacctctcagctc 237

                                                                       
Query: 181 cgaggaccacattcttccaactttttaccctcacaatccatccttccttccttccttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cgaggaccacattcttccaactttttaccctcacaatccatccttccttccttccttcct 177

                                                                       
Query: 241 tccttccttccttccttccttccttccttccttccttccttccttccttccttccctccc 300
           ||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||
Sbjct: 176 tccttccttccttccttccttccttccttccttccttccctccctccctccctccctccc 117

                             
Query: 301 tccctccct-ccctccct 317
           ||||||||| ||||||||
Sbjct: 116 tccctcccttccctccct 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)