BAC Information

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BAC

Clone NameMSMg01-404E12
Chromosome10 (Build37)
Map Location 103,712,489 - 103,712,907
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404E12.T7 (MSMg01no404_e12.b1)MSMg01-404E12.TJ (MSMg01no404_e12.g1)
ACCAG502989AG502990
length750755
length of high quality
(start - end)
232 (312 - 543)434 (67 - 500)
definitionCHROMAT_FILE: MSMg01no404_e12.b1 PHD_FILE: MSMg01no404_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:53 2005CHROMAT_FILE: MSMg01no404_e12.g1 PHD_FILE: MSMg01no404_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAANGAANCACAATCATTATCGGATCCGCGGAANNCNGCATT
TCCAAAAGCAGCTCTTATATAATAAAACATTTTTTAGAACATGATTTTAA
TATTTTCAACTTTTAATATTCAACAAACAGAATAGTTATTTTAAGATATA
TTTCGTTGTTATGTCACCTTTTCATTTCTGATTTTGTTAATTTGGATACA
GTCTCTGTGCCCTCTGGTTAGTCTGAACAAAGGTTTCTCTATCTTGTTTA
CTTTATCAAAGAACCAGCTCCTGGTTTTGTTGATTCTTCATACAGTTCCT
TTTTGNTTTATTTGGTTGATTTCACCCCTGAGTTTGATTATTTCCTGCCA
TCTACTCCTCTTGGGTGTATTTGCTTCCTTTTGTTCTAGAGCTTTCAGGT
GTGCGGTCAAGCTGTTAGTGTATGCTCTCTCCGGTTTCTTTTTGGAGGCA
CTTAGAGCTATGAGTTTTCTTCTTACCACTGATTTCATTGTGTCCCATAA
GTTTTGGTATGATATATCTTCATTTTTATTAAATTATAAAAAGCCTTTAC
TCTTTCCTTATTTCTTCCTTAACCAAGGTATCATTGAGGAGAGCATTGTT
CCACTTTCATGTAGATGCACGCTCTCTGGGNATTTTGATTTTGTTTTTTC
GGAAAAAGGCAATTTTGCTCCGCTCCGCTTAGCACTTTGTACTTCACTAT
CTTTTCTTCCTTTTATTAATTATATATCATTTTACTACCTCCCTCCCCCN

GTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTAGGATTCACAATTTCAAGAAATGTATGACT
CATTAAATAAATTCGTCTTATAATATCATTTTTAATTTTATTTCTTATGG
AATGCAATGTTTTCTCAATTGTACTTACAGAGTAACTCATGAGTAATTCA
TTTTGGAATTGGAAACAACTCCTTCTAAGCAAGATGAAGATTTATTTTAA
AGCTAAAAAAATTGGAAGAACTTTCAAACCAACACTTGTACTTTCAAAAG
CTCATTTTTCATAGAGGTTAGTAATATGAAAATCATATTGTTTCTGAGGA
AATCAAATATTAAAGCTCAGTTATTTTACTGTTGACAGTGACTCTTACTT
AGAAATGATTCCTGTGTTCCAGTAGTTTTTAATTGGCAACTTTCATGTAA
ATACAGCTTTTTAATTAAAGTCTACATGTATTTCTTCCCAAAGGACTTTT
TCATGTACAAAGATGATTTGAATTCCACAAACCAGACATAGATTTTTAGT
ACTTATCAAAATGATTTGCTTTCAGCCATAGACTTAAAAATATTCCCAAT
ATCCGAACAATTACTTTCTAAACCCCAAATTTTGTCTTTGTTTTAAACAC
ACTTTTATCCATTTTACGCCCGTATTTGGAACAGCGCATATTTGAATATC
CACCCTTTATTGGTTATTTTGTGCCTTACATTTGCTTTATTAATCCCCCA
TTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_e12.g1 MSMg01no404_e12.g1 CHROMAT_FILE:
MSMg01no404_e12.g1 PHD_FILE: MSMg01no404_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:53 2005
         (434 letters)



>mm_chr10_103712289_103713122
          Length = 834

 Score =  739 bits (382), Expect = 0.0
 Identities = 414/434 (95%), Gaps = 15/434 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaggattcacaatttcaagaaatgtatgactcattaaataaattcgtcttataatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaggattcacaatttcaagaaatgtatgactcattaaataaattcgtcttataatat 260

                                                                       
Query: 61  catttttaattttatttcttatggaatgcaatgttttctcaattgtacttacagagtaac 120
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 261 catttttaattttatttcttatggaatgcaatgttttctcaattg--------------- 305

                                                                       
Query: 121 tcatgagtaattcattttggaattggaaacaactccttctaagcaagatgaagatttatt 180
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 306 tcatgagtaattcattttggaatcagaaacaactccttctaagcaagatgaagatttatt 365

                                                                       
Query: 181 ttaaagctaaaaaaattggaagaactttcaaaccaacacttgtactttcaaaagctcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttaaagctaaaaaaattggaagaactttcaaaccaacacttgtactttcaaaagctcatt 425

                                                                       
Query: 241 tttcatagaggttagtaatatgaaaatcatattgtttctgaggaaatcaaatattaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttcatagaggttagtaatatgaaaatcatattgtttctgaggaaatcaaatattaaagc 485

                                                                       
Query: 301 tcagttattttactgttgacagtgactcttacttagaaatgattcctgtgttccagtagt 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccagttattttactgttgacagtgactcttacttagaaatgattcctgtgttccagtagt 545

                                                                       
Query: 361 ttttaattggcaactttcatgtaaatacagctttttaattaaagtctacatgtatttctt 420
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 546 ttttaattggcaactttcatgtagatacagctttttgattaaagtctacatgtatttctt 605

                         
Query: 421 cccaaaggactttt 434
           ||||||||||||||
Sbjct: 606 cccaaaggactttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)