BAC Information

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BAC

Clone NameMSMg01-404H15
Chromosome10 (Build37)
Map Location 67,689,320 - 67,810,697
singlet/doubletdoublet
Overlap geneArid5b, LOC100040136
Upstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
Downstream gene1700040L02Rik, EG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H15.T7 (MSMg01no404_h15.b1)MSMg01-404H15.TJ (MSMg01no404_h15.g1)
ACCAG503136AG503137
length752756
length of high quality
(start - end)		520 (35 - 554)496 (65 - 560)
definitionCHROMAT_FILE: MSMg01no404_h15.b1 PHD_FILE: MSMg01no404_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:10 2005CHROMAT_FILE: MSMg01no404_h15.g1 PHD_FILE: MSMg01no404_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,689,320 - 67,689,835)(67,810,202 - 67,810,697)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGCT
TTCCTGAACTTTACCACTGGCACTGCCTTGGGGAGACATTGTCTTATATG
AACTGGCTTGATTGACCGCATTGTCTCCGTCTGTGACCATGAATAGTGGA
ACTAGGCAGAGAGTCGACATTTCATGAAAAAAGTTCTATCATTTGTGATT
TAAAATTGCCAACTCTCTTTTTGGCTCGTAGGCTATACTCTAAGAATATA
ATATGAAAATATTTCTGTGATAAGCTAGGGACACCCAATGAGAAGATGAA
AGGCCTGATGTCTTGAGGTGGAACGGATAGCCATTTGTTGCCAGAACTCA
CATCAGCATGAGAAATCTCATAGTTTTGCATCAACCTAAAACCCCCCAAA
ATCCAAATGAATAAATCACAAAAGAGCCTTAAGCTAAACTATTATCGTCT
CTGCATCTCAGTAGACTCTCCAGAGTCTGAGCTGTTCACAGAGAAGCGAA
TAGTTATGTGTGGCCTCTGCCAGCTCTTGATAGGAAACATCATGATATTT
CTCANATTTGGTTTTATTTATTTATTCCGAAGAGCAGGGTGAACCTGGAG
CCTTTGGTGAGCTTCAAAGCCCTCTACACTTAGCTCCACTCCCTACCCGC
CATGAGGTATTTATCAGAGGACCCGAGAAGTCATTTCCATCTAGAAAGAA
GAGTCTGACCCAGTCTACGCCCCTTCAAAAATCCAAGGTCGAAAAGACCT
GG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGAGACACCATCTCAAGCACAAACCCCCACACACG
ATACAAGTAAAAATCTAATGTATAATATATATTTCTAAACCTTAGGCATC
TATGGGGAAAATCTTTTACAACTAATTATCACCAGTTCATGGATTCACCA
CTGAAATCAAATCGTGGTGTCCAAAGAAGACTAAAATTGCGGTCCTTCAC
TTTCCAACGTCTCTTATCCTAAGGTATTTCTACTTTTCCAGGGGAATGCA
GCCAAGTTAACTCAAATACCTTTAAGTAATTAGTGCAACTATTTTTCCCC
CCTCTGTGTGAGTTTTCCCTTCGTTACATCTCAATGAGCTTGTTTTAAGT
CAGGGGATCTAAGAATCAAATCATAATTGGTAACTTGCTATTCCCCCCAC
GGAGTGGCTGAATGCCTCCCTTAAGCTATGACATTCACTCCCAGATAGTT
TAGAATCTTTAGCAAAGCCAGAGCTCAGAAGCATCGCAGAACCCTCTGCA
GGTCAGGTTTAAGCTGATAAGTGGAGGAGCTGACCTTCAAAGGCTATAGT
TTTGATTTTAAGCCATGCTCACCCACCAAGATGTGCCAATTTCCATGTTC
TCCAAGCTTGGTATCCCTAACCCCCACCCCCTCACTTCTCTTTAACAGCC
CCTAACAAATGGGGCAAAAACACTCTTTTTTCGATTGTAAAGCGCTTTTG
TTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h15.b1 MSMg01no404_h15.b1 CHROMAT_FILE:
MSMg01no404_h15.b1 PHD_FILE: MSMg01no404_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:10 2005
         (520 letters)



>mm_chr10_67689116_67690035
          Length = 920

 Score =  982 bits (508), Expect = 0.0
 Identities = 514/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgctttcctgaactttaccactggcactgccttggggagacattgtcttata 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgctttcatgaactttaccactggcactgccttggggagacattgtcttata 264

                                                                       
Query: 65  tgaactggcttgattgaccgcattgtctccgtctgtgaccatgaatagtggaactaggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaactggcttgattgaccgcattgtctccgtctgtgaccatgaatagtggaactaggca 324

                                                                       
Query: 125 gagagtcgacatttcatgaaaaaagttctatcatttgtgatttaaaattgccaactctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagtcgacatttcatgaaaaaagttctatcatttgtgatttaaaattgccaactctct 384

                                                                       
Query: 185 ttttggctcgtaggctatactctaagaatataatatgaaaatatttctgtgataagctag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttggctcgtaggctatactctaagaatataatatgaaaatatttctgtgataagctag 444

                                                                       
Query: 245 ggacacccaatgagaagatgaaaggcctgatgtcttgaggtggaacggatagccatttgt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ggacacccaatgagaagatgaaaggcctgatgccttgaggtggaacggatagccatttgt 504

                                                                       
Query: 305 tgccagaactcacatcagcatgagaaatctcatagttttgcatcaacctaaaacccccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccagaactcacatcagcatgagaaatctcatagttttgcatcaacctaaaacccccca 564

                                                                       
Query: 365 aaatccaaatgaataaatcacaaaagagccttaagctaaactattatcgtctctgcatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatccaaatgaataaatcacaaaagagccttaagctaaactattatcgtctctgcatct 624

                                                                       
Query: 425 cagtagactctccagagtctgagctgttcacagagaagcgaatagttatgtgtggcctct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtagactctccagagtctgagctgttcacagagaagcgaatagttatgtgtggcctct 684

                                               
Query: 485 gccagctcttgataggaaacatcatgatatttctca 520
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccagctcttgataggaaacatcatgatatttctca 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_h15.g1 MSMg01no404_h15.g1 CHROMAT_FILE:
MSMg01no404_h15.g1 PHD_FILE: MSMg01no404_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:10 2005
         (496 letters)



>mm_chr10_67810002_67810897
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 492/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagacaccatctcaagcacaaacccccacacacgatacaagtaaaaatctaatgtata 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aggagacaccgtctcaagcacaaacccccacacacgatacaagtaaaaatctaatgtata 637

                                                                       
Query: 61  atatatatttctaaaccttaggcatctatggggaaaatcttttacaactaattatcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atatatatttctaaaccttaggcatctatggggaaaatcttttacaactaattatcacca 577

                                                                       
Query: 121 gttcatggattcaccactgaaatcaaatcgtggtgtccaaagaagactaaaattgcggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 576 gttcatggattcaccactgaaatcaaatcgtggtgtccaaagaagactaaaatcgcggtc 517

                                                                       
Query: 181 cttcactttccaacgtctcttatcctaaggtatttctacttttccaggggaatgcagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cttcactttccaacgtctcttatcctaaggtatttctacttttccaggggaatgcagcca 457

                                                                       
Query: 241 agttaactcaaatacctttaagtaattagtgcaactatttttcccccctctgtgtgagtt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agttaactcgaatacctttaagtaattagtgcaactatttttcccccctctgtgtgagtt 397

                                                                       
Query: 301 ttcccttcgttacatctcaatgagcttgttttaagtcaggggatctaagaatcaaatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttcccttcgttacatctcaatgagcttgttttaagtcaggggatctaagaatcaaatcat 337

                                                                       
Query: 361 aattggtaacttgctattccccccacggagtggctgaatgcctcccttaagctatgacat 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aattggaaacttgctattccccccacggagtggctgaatgcctcccttaagctatgacat 277

                                                                       
Query: 421 tcactcccagatagtttagaatctttagcaaagccagagctcagaagcatcgcagaaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcactcccagatagtttagaatctttagcaaagccagagctcagaagcatcgcagaaccc 217

                           
Query: 481 tctgcaggtcaggttt 496
           ||||||||||||||||
Sbjct: 216 tctgcaggtcaggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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