BAC Information

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BAC

Clone NameMSMg01-404L11
Chromosome10 (Build37)
Map Location 74,467,126 - 74,467,376
singlet/doubletsinglet
Overlap geneGnaz
Upstream genePcdh15, EG630453, EG623346
Downstream geneLOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L11.T7 (MSMg01no404_l11.b1)MSMg01-404L11.TJ (MSMg01no404_l11.g1)
ACCAG503318AG503319
length758761
length of high quality
(start - end)
232 (323 - 554)256 (54 - 309)
definitionCHROMAT_FILE: MSMg01no404_l11.b1 PHD_FILE: MSMg01no404_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:29 2005CHROMAT_FILE: MSMg01no404_l11.g1 PHD_FILE: MSMg01no404_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCATTCAACATATCCGCGGAATTCTCAC
CTGATGACTACACAAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATC
CTTAATCATCAGGGAACTGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCGGGTGACAGCAGATGCTGG
CGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGTAT
GCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGG
ACATAGTACTACTTGATGANCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGA
CCTGCAGGGCATCATCCTGAGTGAGGTACCCCATTCTCCAAGTAACTCAC
ACCATATGTATTCCCTGAAAAGTGGATATTAGCCCCCAACCCAGGGATAA
CCCCTATTTTTTATTTTTTTTTGTCAACCACCTGAAACTTTCCAATAATG
AAAACCGACCTGGGGATCCTCAGCCCCCTCCTACATTTTGTGAATATAAC
CTCCCCGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCTGAAATTCTGGATCTCTAATGTTCACTGGCCTTCCCTTCCCCGGG
TCTGTTCTCATCCAGTCCCCTTTTTCTCTCAGATGCTGCCTCCTCCCCAA
CCAGGGCTGGTCTGCTGTTATCCAGGCAGGAAGGGGAGGCAGACCTAGTA
TATAGAGTGCCTTGGGAGCAGCCCCCCTCTGGCCAGCAGCAAATGAGATT
TCTCTGGGTTGGAGGTTGGGGCAGGGGTATAATCTAACAAGTCCAGAAGG
CAACCCCTGTTTATTCATGTCCCTCCAGGTGCCCAGTGAAAAGTGCGATG
TTCACAGAAACAGTATACGCCGGGCCTGCCACTTCAAACAGTAAGGGCTG
TTTAAACAAGATAAGAGGCTGTGGGTAAGGCTACACCTCAGGCTCTAATA
ACATGGGGCAGCTTTGTTATGAGCCTGCCAGAGATGGTAGGAGCAACTTC
CTGCATCACACAGCAGGTGAGCCTCTGGCCACCTCCTGTTTTACTATACA
GTGTACAAGGTGCTGGCATGCCCCTACTTGGTGGTAATGGAGACTACCTC
CCAAAGCCCCCTAATCCCTGGTGTATGGGTGCGTTAACGGTCCTCATTGG
TAAGTCCCCCCTTTTTTATAGGTTGTGGAGTCCCCTGTATTTTTAACCCC
CTTATCTTTAGTTTGTATATCTCTTTTTTTTCTTTTCTGTCCGTAAAAAC
TTCTCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l11.g1 MSMg01no404_l11.g1 CHROMAT_FILE:
MSMg01no404_l11.g1 PHD_FILE: MSMg01no404_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:29 2005
         (256 letters)



>mm_chr10_74466921_74467576
          Length = 656

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctggatctctaatgttcactggccttcccttccccgggtctgttctcatccagtcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aattctggatctctaatgttcactggccttcccttccccgggtctgttctcatccagtcc 397

                                                                       
Query: 66  cctttttctctcagatgctgcctcctccccaaccagggctggtctgctgttatccaggca 125
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 cctttttctctcagatgctgcctcctccccaaccagggttggtctgctgttatccaggca 337

                                                                       
Query: 126 ggaaggggaggcagacctagtatatagagtgccttgggagcagcccccctctggccagca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggaaggggaggcagacctagtatatagagtgccttgggagcagcccccctctggccagca 277

                                                                       
Query: 186 gcaaatgagatttctctgggttggaggttggggcaggggtataatctaacaagtccagaa 245
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 gcaaatgagatttctctgggttggaggttggggcaggggtataatttaacaagtccagaa 217

                      
Query: 246 ggcaacccctg 256
           |||||||||||
Sbjct: 216 ggcaacccctg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)