BAC Information

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BAC

Clone NameMSMg01-405E24
Chromosome10 (Build37)
Map Location 4,403,654 - 4,403,992
singlet/doubletsinglet
Overlap genenone
Upstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E24.T7 (MSMg01no405_e24.b1)MSMg01-405E24.TJ (MSMg01no405_e24.g1)
ACCAG503773AG503774
length783787
length of high quality
(start - end)
359 (52 - 410)369 (82 - 450)
definitionCHROMAT_FILE: MSMg01no405_e24.b1 PHD_FILE: MSMg01no405_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005CHROMAT_FILE: MSMg01no405_e24.g1 PHD_FILE: MSMg01no405_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAATTCTTACTTTTCCTTAAGGTTTCTTCTGTTGATTT
TCTTCTTTCCTATTTCAGTTTCCTTCCTGTGACTTTTACAGTCTCTCCTG
AATCTTTTACTTTTCTAATTTATCCTTTTAAAAATGAAATATTGTTTTCT
ATGTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAATCTCCGTTG
ATTTGTTTGGAATGTTTTCATTTTTTGTTAAGTTCTTTTAATGAAAACTA
AAATTAATATCTAATACTTAAGCATTGTTTTGCAGTTTTCATCTGATCCA
TGACTTTATTTTTCTCATGAATTCTCATTGTTTGTCTTAATGGCATTAAG
GTTTTATTCAAAATTTCCATGTAATAATTTCCTAAGGTGTTATACAACAT
TTCTCTGTTCCCTTTGTTAGATGAGCGACTCTATTAATTGACATTTTTTG
AGTTATTTTTTGACTGGTACGGTTTGATGGTTTTTTCTGTCCTTTTTCAA
ATTTTTACAATTTTTGTTTTCTTTGTTTTCCTAAATAGATCCCCTAACTT
TTTTGTTTTCTCTTCTTAATATTTTTCCTTTTTCTTTTTTTTTGTTTTTC
AAACATTCTTTTGCTTCCTATTCTCTTATTTATTCACTCGCCCTTCCTTA
TCTCTATTGTTGTATTATACATTGAGCTTTTTTCACTTTTAATTTTCTAC
TCTCTTTATTCTCACTCTCCTTTTTTTTCCCCA
NNTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCTC
CATTTTTTAATGGTGTTATTAGAATTTCTAGAGTCCACCTTCTTGAGTTC
TTTATATGTATTGGATATTAGTCCCCTATCTGATTTAAGATTGGTAAAGA
TCTTTTCCCAATCTTTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTT
GCCTTACAGAAGCTTTGTAATTTTATGATGTCCCATTTGTTGATTCTCCA
TCTTAAAGCACAAGCCCTTGCTGTTCTATTTAAGAATTTTTCCCTGTGCC
CATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAATTCCTTGATCCACTTAAACTTGATCTTTGTACAA
GGAGATAAGAATGGATTAATTTGCATTCTTCTACTTGACAACTACCAGAT
GCGCCCGCCCCATTTTGTTGAAATGCTGTCTTTTTTTCACTGGAGGGGTT
TAGCTCCCTTTGCCATGATATATTTGTCCTTATGTGTTTTGGTTTTTTTT
TTGCGCTCCATATTTTCTTTCCTTTTCGTTTTTTTGGTTTGCTTCTTTTA
TCACCACCCTTTGCGCTTTTTCTTTTCCCTCGTTCCTCTTTTTATTTTCT
TCCCCTTCTTTTCTCTTTTTTCTTTCTCCTTCTACCCTCTTTCCCCCCTT
TTTTTTTTTTGTTTCCTCTCTTTTTTTCCTTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e24.b1 MSMg01no405_e24.b1 CHROMAT_FILE:
MSMg01no405_e24.b1 PHD_FILE: MSMg01no405_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:15 2005
         (359 letters)



>mm_chr10_4403269_4404026
          Length = 758

 Score =  520 bits (269), Expect = e-152
 Identities = 327/355 (92%), Gaps = 16/355 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaattcttacttttccttaaggtttcttctgttgattttcttctttcctattt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattctcaattcctacttttccttaaggtttcttctgttgattttcttctttcctattt 665

                                                                       
Query: 65  cagtttccttcctgtgacttttacagtctctcctgaatcttttacttttctaatttatcc 124
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 --gtttccttcctgtgacttttacagtctctcctgaatcttttacttttctaatttatcc 607

                                                                       
Query: 125 ttttaaaaatgaaatattgttttctatgttttgctttttttttttttttttttttttttt 184
           |||||||||||||| |||||||||||  ||||||| ||||||||||||            
Sbjct: 606 ttttaaaaatgaaaaattgttttctacattttgctatttttttttttt------------ 559

                                                                       
Query: 185 tacaaatctccgttgatttgtttggaatgttttcattttttgttaagttcttttaatgaa 244
            |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 558 -acaaatctccattgatttgtttggaatgttttcatttcttgttaagttcttttaatgga 500

                                                                       
Query: 245 aactaaaattaatatctaatacttaagcattgttttgcagttttcatctgatccatgact 304
           ||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct: 499 aactaaaattaatctctaatacttaagcattgctttgtagttt-catctgatccatgact 441

                                                                  
Query: 305 ttatttttctcatgaattctcattgtttgtcttaatggcattaaggttttattca 359
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ttatttttctcatgaattctcattgtttgtcttaatgtcattaaggttttattca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)