BAC Information

Click to search

BAC

Clone NameMSMg01-405J16
Chromosome10 (Build37)
Map Location 67,900,901 - 67,901,401
singlet/doubletsinglet
Overlap gene1700040L02Rik
Upstream geneEgr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136
Downstream geneEG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405J16.T7 (MSMg01no405_j16.b1)MSMg01-405J16.TJ (MSMg01no405_j16.g1)
ACCAG503996AG503997
length773755
length of high quality
(start - end)
501 (73 - 573)415 (73 - 487)
definitionCHROMAT_FILE: MSMg01no405_j16.b1 PHD_FILE: MSMg01no405_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:38 2005CHROMAT_FILE: MSMg01no405_j16.g1 PHD_FILE: MSMg01no405_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCG
GAATTCAGTCCATTTGCATATGCGCTGGTAAACCCATCAAGCAAACCCTG
CTCCAGCCCTATCCAAACCGTGTAAAGGAAAAGCATTAACATTTCAATGA
TGGGGTGTAAAACAGAGAACTTAGAAATGACTGCAATGCTTTCAAGATAC
CCCCCTCTCCCAAAAAAGTGTCCTAAGATGCTAATAGGGTCCGGAATGCT
TTTCCATAGTTCTTCAAACTCGCATGCTCAGGCCCAACTCTTGTTAGCAG
AGCAGTGAGTGACTTCAACTCATATTTTCGCTAACAAGCTCGTGAGTGTT
TGCTATGTAAATTGGAACAAGTTATTGATTTTTTACTGAGGTATGTAGAA
GATATGAAAACCAGAACATTCAAGTGGCCATGTCTTTACAGATCAACTGA
GATGGGAAATTAAATTATGGTTAAAAACACTGCCTGTTAAACACAGAATT
AGAACAAGGGGAACTAATGAAAAGAATCAGAGGCTTGATGCCTTTAGTAA
CCTCATCTCCTCATCCATGCCACGCCACAGTGGCTGGACTACAGACCCGG
CCAAAGTTGGCGTCCAAGGGTCTCCATATCTTTCATTGCTGGTTCCGACA
GCCTCCTTCACCCTTCTTACCTGCACCCTGGGGGGAAAAGAACATTCCCT
TGCCTTTAGGGAGATCTCACTCTTGCTCCGAAATTTGGTGGCGAGCCCCC
CCCGAAAGAATCTGTTTGTCCCC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCAACAATTGAAATACCAACAAGAA
CTGGGGATAGTTGATCCATTCTGTGTGAGTTTATTATAAGAATGGGCTGG
GCAGTGGTGGCACACACCTTTTAATCCTAGCATTTGGGAGGCAGAGGCAG
GTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA
CAGCCAGGGCCTTACAGAGAAACCCTGTCTCAAAAAAAAAACAAAAAAAA
AAAAACAAAAAAAAAACTCTTTAAAACAAAACAAAAACAAAACAAAAACA
AACAAAAAAACAAATAAGAATGGAAGCAGGATAATGTTAGTGAACACCAT
GGCTTATCTGCGCATTCAAATTTAATTTACAGAAAGTAATGGTTTCTTTT
TTTCCCCAAAGATTTATTTATTTAATATATATGAGCACACTGTCACCGTC
TTCAGACACCCCAGAAGAGGGTATCAGATCTCATTTCAAATGGTTGTGAG
CCACCGTGTGGTTGCTAGGAATTGAACTCCTGACCTCCGGAATATCCCTC
CGGGTTTCCAATCCTTGAGCCATTTTCCCTGCCCATGTTTTTTCATATGC
GCCGGCTTATTCACCCGTTTTGTTCTTCTTTTTTGCCCTTATTCCCCTTT
TCCCCTGTTTGTTTCCCTGTAGCCTTTTCTTTCCTAATTTTCCCCCCTCT
TTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_j16.b1 MSMg01no405_j16.b1 CHROMAT_FILE:
MSMg01no405_j16.b1 PHD_FILE: MSMg01no405_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
         (501 letters)



>mm_chr10_67900701_67901601
          Length = 901

 Score =  878 bits (454), Expect = 0.0
 Identities = 490/502 (97%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgctggtaaacccatcaagcaaaccctgctccagccctatccaaa-ccgtgtaaaggaaa 59
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 701 cgctggtaaacccatcaagcaaaccctgctccagccctatccaaagcc-tgtaaaggaaa 643

                                                                       
Query: 60  agcattaacatttcaatgatggggtgtaaaacagagaacttagaaatgactgcaatgctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agcattaacatttcaatgatggggtgtaaaacagagaacttagaaatgactgcaatgctt 583

                                                                       
Query: 120 tcaagatacccccctctcccaaaaaagtgtcctaagatgctaatagggtccggaatgctt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 582 tcaagatacccccctctcccaaaaaagtgtcctaagatgctaatagggtcgggaatgctt 523

                                                                       
Query: 180 ttccatagttcttcaaactcgcatgctcaggcccaactcttgttagcagagcagtgagtg 239
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 522 ttccatagttcttcaaactcgcatgctcaggcccaactcttgttaccagagcagtgagtg 463

                                                                       
Query: 240 acttcaactcatattttcgctaacaagctcgtgagtgtttgctatgtaaattggaacaag 299
           ||||||||||| |  ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 acttcaactcagaacttcactaacaagctcgtgagtgtctgctatgtaaattggaacaag 403

                                                                       
Query: 300 ttattgattttttactgaggtatgtagaagatatgaaaaccagaacattcaagtggccat 359
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 ttattgattttttactgagttatgtagaagatatgaaaaccagagcattcaagtggccat 343

                                                                       
Query: 360 gtctttacagatcaactgagatgggaaattaaattatggttaaaaacactgcctgttaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtctttacagatcaactgagatgggaaattaaattatggttaaaaacactgcctgttaaa 283

                                                                       
Query: 420 cacagaattagaacaaggggaactaatgaaaagaatcagaggcttgatgcctttagtaac 479
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 cacagaattagaacaaggggaactaataaaaagaatcagaggcttgatgcctttagtaac 223

                                 
Query: 480 ctcatctcctcatccatgccac 501
           ||||||||||||||||||||||
Sbjct: 222 ctcatctcctcatccatgccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)