BAC Information

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BAC

Clone NameMSMg01-406B24
Chromosome10 (Build37)
Map Location 22,975,133 - 22,975,284
singlet/doubletsinglet
Overlap geneEya4
Upstream geneLOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406B24.T7 (MSMg01no406_b24.b1)MSMg01-406B24.TJ (MSMg01no406_b24.g1)
ACCAG504394AG504395
length832977
length of high quality
(start - end)
154 (81 - 234)---
definitionCHROMAT_FILE: MSMg01no406_b24.b1 PHD_FILE: MSMg01no406_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:19 2005CHROMAT_FILE: MSMg01no406_b24.g1 PHD_FILE: MSMg01no406_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCCTAAACTTGCGTCCGCTAAACGANTCACTATATGCACCAACTCCGC
GGNAATCATCCAAATTGACATGACAGCCATATGCCATATTGAGTTAGAAG
TATTAAAAACTTATAACAAACTGTTAGCATAAATAAATTTAAAGACATTA
TCAGCAGTGAAAATTTAAATGGCAACAAACAGATAAAACTCTGCAAGGTG
ACACCAAATGTTGATGAGAATATGAACCATCTGGAACTCAGACAAATGTG
AAAAAGCAGACGCCATTTTGAAAAGTAGCTTGTAGCGAACAGTACAAGCA
TCATCACATTGTCCCCGCCCAACCTTTTTTTCTTCTTCCTCCCTTCTCCT
TTCTTCCCCCTCTTTTTCCCCCTCCTTCTTCCCCTCTCCTTTTTTTACTT
CTTTTATTTTCTCTTCTTTCTTTTTTTCTTCCCTTCTTATTTCTTTTTTT
TTCTTTTATCCTTCTTTTTACCTTCTTATCTCTCTTTACACCTCTTTTCC
TTCCTTCTTTTTTCCCCTCTTCTTCCCCCTATTCTTTTTTTTCTCCCCCC
TCTACATATTTCCCATCTCCTCTCCTCTACCCCCCCCTTTTTTTCCCTCC
CCTTTCCTATTACTCCCCTTTCTTCATCCCACCCTATCCACCTTTTCCCT
TTTTTCCCTCCCTGCTCCCATCTGTGTTTTTCTTCACTTCCTTCTTCCAC
CTATCCTTACTTTTTATTCACTCTCCCCTTATCTTTCTCACCTCTTTCTA
TTCTTCTTCTTTTCTCTTGCTACTATTTTCTTCTCTCCCCCCCACTTTCC
CTTATTTTCATTTCCCTCTTTCCTTTCTTCTT
TCCGATGAAGTGGGTAGGCCTGGGGGGCGCCTGGTCTGCCGAATAAGAGG
NGAACTATAGAAGGTTTCCCGAAAAAACTACGCGAGCAGAGCCAACTGCA
CTAACTATTGTAAAATATATTCTTTCTGTCCCCATTTCTTGTGCAGAAGT
GAAGACTAGGACCTATGTATGTCCCAATCCACTCTTGCGCGGCTGTACCA
ACATCCTCCAACCCTACCTCCTTTTACTCCCGCTATCTGCATCGTCCCGC
ACCACCTTACTGTCTTATATTTTCTCTACGTTAAAGTTTTTATTATCACC
TACCCCCCCGGCGGTGAGGGGCGTCCTGCTAGACAATATATAATTACGTC
GTCCCTAGATATTAATTTCATCCTGATTTACGCAGACCTCCTTGAGTTAT
TTGTCCGCAGTCGACGCGAATAATACACAAAGAACCGAACGACTTCATTG
AAGGACCGCGTTACACGCCGCAAATCAATTCCGAGGCGTGAGTCCCGACC
GTGAACTTATAAGATAGCTAAATCGCGATGTATCACCATATCGTGCTACT
CCCCTATCTTTCCCTCCGAATTATAACTCACACTAATATACGCGTTTTAT
ACATTATAAATCCGTCAGACACCCCTATCTCCTAGATTTAGTTTCTTACC
CCTCACGCTCTATGCTCTGTTACCACTATATTTCGTATATATCTCACGAC
TACAGACAGACTGCCCACCATAGCTATCCAGTGATAACCACCCACTATCT
TATCTACCACGATTAACCATCGTGTTTAACTGTCGTATATTNTAGTATTA
CTACCCAACCAATATACAATTTATTGAGTTGCGGGTTTTCTGTGCTTATC
ATATATGGACAGGTCTCGCGCTAGTATATCCTACTACATGGGCTCTCGTA
TAAACATGCGCTGTACGATATATTGGAGGAAGAAGAACATATTTGGATGC
TCCATTGAATGCACCTCATATATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_b24.b1 MSMg01no406_b24.b1 CHROMAT_FILE:
MSMg01no406_b24.b1 PHD_FILE: MSMg01no406_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:19 2005
         (154 letters)



>mm_chr10_22974933_22975485
          Length = 553

 Score =  257 bits (133), Expect = 2e-73
 Identities = 148/153 (96%), Gaps = 1/153 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccatattgagttagaagtattaaaaacttataacaaactgttagcataaataaattt 60
           ||||||||||||||||||| ||| | |||||||||||||||||  |||||||||||||||
Sbjct: 201 atgccatattgagttagaaatatcagaaacttataacaaactgg-agcataaataaattt 259

                                                                       
Query: 61  aaagacattatcagcagtgaaaatttaaatggcaacaaacagataaaactctgcaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagacattatcagcagtgaaaatttaaatggcaacaaacagataaaactctgcaaggtg 319

                                            
Query: 121 acaccaaatgttgatgagaatatgaaccatctg 153
           |||||||||||||||||||||||||||||||||
Sbjct: 320 acaccaaatgttgatgagaatatgaaccatctg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 553
Length adjustment: 8
Effective length of query: 146
Effective length of database: 545
Effective search space:    79570
Effective search space used:    79570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)