Query= MSMg01no406_f24.b1 MSMg01no406_f24.b1 CHROMAT_FILE:
MSMg01no406_f24.b1 PHD_FILE: MSMg01no406_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:39 2005
(220 letters)
>mm_chr10_58928844_58929464
Length = 621
Score = 404 bits (209), Expect = e-117
Identities = 218/221 (98%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 1 tgcagagccaggctctaatgagctctca-ccagaacaatcccactgtgcagagtgggaag 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgcagagccaggctctaatgagctctcagccagaacaatcccactgtgcagagtgggaag 260
Query: 60 acagtttggtgtctgtccctccaggctactcatggaaaaactaagttcctcccaaaggtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtttggtgtctgtccctccaggctactcatggaaaaactaagttcctcccaaaggtc 320
Query: 120 ttcccgaattaacaacgccttattaaagctgctttcacctctctttggtggccgtacgtg 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttcccgaattaacaacgccttattaaagcagctttcacctctctttggtggccgtacgtg 380
Query: 180 gcatgttaagtcattaatgacaagcttaaagtcatcgagga 220
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgttaagtcattaatgacaagcttaaagtcatcgagga 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 621
Length adjustment: 9
Effective length of query: 211
Effective length of database: 612
Effective search space: 129132
Effective search space used: 129132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_f24.g1 MSMg01no406_f24.g1 CHROMAT_FILE:
MSMg01no406_f24.g1 PHD_FILE: MSMg01no406_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:39 2005
(461 letters)
>mm_chr10_59085271_59086134
Length = 864
Score = 685 bits (354), Expect = 0.0
Identities = 399/416 (95%), Gaps = 7/416 (1%)
Strand = Plus / Minus
Query: 52 aaaaaaaaa--ccacttgacaggaggaattctgctgcagaatacatgt---agatctgtg 106
||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 675 aaaaaaaaattccacttgacaggaggaattctgctgcaggatacatgtaggagatctgtg 616
Query: 107 gctgagtcagccaaacct-tagtgatcagacaggtctaatgagagtttcttgtagcatct 165
|||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 615 gctgagtcagtcaaa-ctatagtgatcagacaggtctagtgagagtttcttgtagcatct 557
Query: 166 cctatcagttacgctagctagtgtgtggttatccttggctatgccagacttggtcttcaa 225
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 556 cctatcagttacgctagctagtatgtggttatccttggctatgccagacttggtctttaa 497
Query: 226 caatccaaaaggcctaatgatcacagaacagttatcacatctggcactaagctactggga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caatccaaaaggcctaatgatcacagaacagttatcacatctggcactaagctactggga 437
Query: 286 tacaaagttatgggtgcttgtaaggagacttaagttttacctagatgtttattttcagag 345
|||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 tacaaagttaggggcgcttgcaaggagacttaagttttacctagacgtttattttcagag 377
Query: 346 aaggttatattccccacccccacttacagaagcacagatggctgggatggcttttgagag 405
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 376 aaggttatattccccacccccacttacagaagcacagatggttgggatggcttttgagag 317
Query: 406 agcccagggcacgggaaacaggtttatgagaagcgactgctaagcaaggagtcact 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcccagggcacgggaaacaggtttatgagaagcgactgctaagcaaggagtcact 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 864
Length adjustment: 10
Effective length of query: 451
Effective length of database: 854
Effective search space: 385154
Effective search space used: 385154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
