BAC Information

Click to search

BAC

Clone NameMSMg01-406G24
Chromosome10 (Build37)
Map Location 10,456,947 - 10,457,124
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406G24.T7 (MSMg01no406_g24.b1)MSMg01-406G24.TJ (MSMg01no406_g24.g1)
ACCAG504633AG504634
length748804
length of high quality
(start - end)
227 (331 - 557)173 (81 - 253)
definitionCHROMAT_FILE: MSMg01no406_g24.b1 PHD_FILE: MSMg01no406_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:44 2005CHROMAT_FILE: MSMg01no406_g24.g1 PHD_FILE: MSMg01no406_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGC
GGAATTCTTTGTTCTTCCCTGAACCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTTAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCA
CCATGTCAGACCTAAAGATTTACTACAGAGCAATTGTGATAAAAACTGCA
TGGTACTGGTATAGAGACAGTCAATTATACCAATGGAATAGAATTGAAGA
CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG
CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG
CACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATC
TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCCCATAAAAC
CAGAGACACTGAAACTTATAGAGGAGAAAGTGTGGAAAAGCCTTGTAGAT
ATGGGTACAGGGGAAAAATTCCTGAACAGAACAGTAATGGCTTGTGCTGT
ATTATTTTATTAATGCCAATAATCTCTATATTTGTTAGAAGCATTAAATA
CCTGAAAATCCGCTGGCCTATTCCCCTATGAAAAGCCTTTTGGTCTCG
NNTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATTAGGCAAGTAAGCT
TTTGTGAAGGGAGTATGTGTGGGGGGAAGTTTCATAGAGACAAAGGAAAG
TGCTATAAAATGAAGAGATTTGTATAGATTGCCTATACGGAGCCCCTGCT
CAAGTGCTCTCTCCCTCTCCCTCTCCCTCTCTCTCTCCCTCTCCCTCTCC
CTCTCTTCTTTTGTATTTCCCTTCTTCCTATTGCTGCTTCCTCTTTCCCT
TCTTTTCTCCCATTTTTCTTTTTTTTTTTTTTTTTTCTCCCTATCTTTCT
TCCCATCCCTTTTCTCTTTTTTCTTCCTTCCGTCTCCCTCTCCCTCCTTC
GCTTTCCTTTCTCCCTCCTTTATTTCTCTCTTTTTTTTCCCTTCATTTTC
CTTTTATACCATCTTTTCTCTCCCCCCTCTGCTCTTTCCTCATTTTCTCT
TCTCTCTTTTCCCCATTCTTCGCCCCCCTTTTTCTTCTTCTTTTTTTTCT
CCCTCCTTTTTGTCTCTTCTCTTCCTTTATTTTCCCTCTTTCTTTCCCTT
CCTGTCTCTTTTCCTCTCTCCCTTTCCTCTCCCTTTATTTTCTATCCCTC
CCCCCATTTCTTTCCTATCCTTCTCATCCCTTCTCTTCTTTTCTCGCCTT
ATTTCCCTCCCTTCCTCCCATACGCTCCCCTTCCCCTCCTTCCTCTTTTC
CTTCTTTTTCCTTCCACTTCCCCCCTTTTCTCTTTTCTTCCTCTCCCCTC
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_g24.g1 MSMg01no406_g24.g1 CHROMAT_FILE:
MSMg01no406_g24.g1 PHD_FILE: MSMg01no406_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:44 2005
         (173 letters)



>mm_chr10_10456796_10457369
          Length = 574

 Score =  302 bits (156), Expect = 9e-87
 Identities = 171/178 (96%), Gaps = 5/178 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaattaggcaagtaagcttttgtgaagggagtatgtgt-ggggggaagtttcatagag 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 329 cagaattaggcaagtaagcttttgtgaagggagtatgtgtgggggggaagtttcatagag 270

                                                                       
Query: 60  acaaaggaaagtgctataaaatgaagagatttgtatagattgcctatacggagcccctgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 acaaaggaaagtgctataaaatgaagagatttgtatagattgcctatacagagcccctgc 210

                                                                     
Query: 120 tcaagtgctctctccctctccctctccctctc----tctctccctctccctctccctc 173
           |||||||||||||| |||||||||||||||||    ||||||||||||||||||||||
Sbjct: 209 tcaagtgctctctctctctccctctccctctccctctctctccctctccctctccctc 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 574
Length adjustment: 8
Effective length of query: 165
Effective length of database: 566
Effective search space:    93390
Effective search space used:    93390
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)