BAC Information

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BAC

Clone NameMSMg01-406K22
Chromosome10 (Build37)
Map Location 126,797,401 - 126,797,817
singlet/doubletsinglet
Overlap geneInhbc
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe
Downstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K22.T7 (MSMg01no406_k22.b1)MSMg01-406K22.TJ (MSMg01no406_k22.g1)
ACCAG504819AG504820
length770748
length of high quality
(start - end)		39 (78 - 116)426 (151 - 576)
definitionCHROMAT_FILE: MSMg01no406_k22.b1 PHD_FILE: MSMg01no406_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:05 2005CHROMAT_FILE: MSMg01no406_k22.g1 PHD_FILE: MSMg01no406_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAAAAANNNCNNCCCCNAAAANAANCCCCATTTTCCCAAACACCGN
GNAATTCCNACTGTTCCACACACCCCTCACCTTATTCATCGAGGCAGGAT
CTCTCAGTTGAACCCAAAGCTCCCGGGNTTCCTGCCCCCATCGCGGCCTT
CAAGAAGGGTCCAATTACCGGGAAGGGGGTGGCNAGTTTGAACTCCGGNA
GCCAAAGGCCGCGGGCTTAGCGAGGGGGCGGGCGGGGAGGGGGGGGGGGG
GGCGGGGGGGGGGGGGGGGAGGGGGGGCGGAGAAGGGCCANNCNNCCAAA
AAACCCCCGCCCCGGAACCCTTCTTATCCTTAAACCCGGAAAAAAAAAAA
CCCCCCAAANAACGGGTTTTTTTTAAAACCCCCCAAAAATTAAACTTTTT
TTTTCCCCCAAAAAACCCCCCNNAACCCCCTTGGGAACACCCCCCCCCCA
ACCCCAAAAACCCCAAAAAAAAAAAAAAAAAACCCNNAACAAACCCGGGC
CCCCCCCTCCCCCCCCCCCGGGGAGAACCCCCCCCCCCCCCCCCCCCNAA
AAACCCCCTTTTTCCCCCCCCCCCCCAAAAAACCTCTCCCCCCCCCCCCC
CCNCCNTATAACACCAAAAAAAGAGATATTTTCAACCCCCCCCCCCCCCT
CCCCCCCTCCCCCAACAACCCAAACAACCCCAACCCAACCTCCCTTCTNC
CCCCCNCCCCCCCNCCCCCCACCCCCCCCCCTCCCTCCTTCCCCTCCCCG
TAATACGGGGTAGGGGGGGG

CCCCTCGATGATATTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCTGGGCTACTGAAAAATG
TAAAGGCCATCTTTGTCTACATGGTAAGAACCTGTATCAAAATATCAGCC
CTAAAAAAAAAAAAGAAAGAAATTAAGATGCTAGCATTACTACCCTTTAG
AATCATTCTGGTGAGGGACCAGATGTGGGGAGGAGAAGATCGCAGGGTTT
GTAGAGGCAAGAAGTAAGGAGTCCTCCCATTGGTGCAATTCACATACAGG
AAGGAGGGATGAATAGATCTTCTAGTTACAGCAACTGGACCATGATGTGC
TGGCAGGACACCCGTGTGCCACCATTAGGCAGAATGTAGGCGTGAATTCG
GTGATACCTGAGTCTGTAGGTCCAGACTCCATATGCAATTGTCCTGACCT
AGCTGTATGAGAATCACTCACATAAAGATTATGTTGAGGACGACTCACAG
TATAGCCAAGGATCCTTTTTAACATTGAGTTAAAGGAGAGGAAGGCAGGA
GGCCCTGGAGCAGTTAAAGAACTTTCACTCTGAAGGTACAAAGGAAATCC
TTCAAGGAAAACAAGCAAGAACTCCCCTGTGTGGTGGATACTCATTGCAC
GGAGTGAACTTCCTAGTGGCCGTGGATCTTTAACTGTATAAAGTGTTTTC
GCCCACCCCCATGGGATAATCCTCTATAATTCCACTTTCCCAGCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k22.g1 MSMg01no406_k22.g1 CHROMAT_FILE:
MSMg01no406_k22.g1 PHD_FILE: MSMg01no406_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:05 2005
         (426 letters)



>mm_chr10_126797194_126798017
          Length = 824

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   aaaaaaagaaagaaattaagatgctagcattactaccctttagaatcattctggtgaggg 67
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaaaaa-aaa-aaattaagatgctagcattactaccctttagaatcattctggtgaggg 567

                                                                       
Query: 68  accagatgtggggaggagaagatcgcagggtttgtagaggcaagaagtaaggagtcctcc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 accagatgtggggaggagaagatcgcagggtttgtagaggcaagaagtaaggagtcctcc 507

                                                                       
Query: 128 cattggtgcaattcacatacaggaaggagggatgaatagatcttctagttacagcaactg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cattggtgcaattcacatacaggaaggagggatgaatagatcttctagttacagcaactg 447

                                                                       
Query: 188 gaccatgatgtgctggcaggacacccgtgtgccaccattaggcagaatgtaggcgtgaat 247
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaccatgatgtgctggcaggatacccgtgtgccaccattaggcagaatgtaggcgtgaat 387

                                                                       
Query: 248 tcggtgatacctgagtctgtaggtccagactccatatgcaattgtcctgacctagctgta 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcggtgatacctgagtctgtaggtccagactccatatgcaattgtcctgacctagctgta 327

                                                                       
Query: 308 tgagaatcactcacataaagattatgttgaggacgactcacagtatagccaaggatcctt 367
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 tgagaatcactcacataaagattatgttgaggacgactcacagtatagccaaggatccct 267

                                                                      
Query: 368 tttaacattgagttaaaggagaggaaggcaggaggccctggagcagttaaagaactttc 426
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttaacattgagttaaaggagaggaaggcaggaggccctggagcagttaaagaactttc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 824
Length adjustment: 9
Effective length of query: 417
Effective length of database: 815
Effective search space:   339855
Effective search space used:   339855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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