BAC Information

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BAC

Clone NameMSMg01-407D07
Chromosome10 (Build37)
Map Location 53,349,751 - 53,349,968
singlet/doubletsinglet
Overlap geneMcm9
Upstream geneSlc35f1, Pln, EG432460, Asf1a, LOC100042554
Downstream gene4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D07.T7 (MSMg01no407_d07.b1)MSMg01-407D07.TJ (MSMg01no407_d07.g1)
ACCAG505220AG505221
length746746
length of high quality
(start - end)
218 (71 - 288)526 (75 - 600)
definitionCHROMAT_FILE: MSMg01no407_d07.b1 PHD_FILE: MSMg01no407_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:47 2005CHROMAT_FILE: MSMg01no407_d07.g1 PHD_FILE: MSMg01no407_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCCTGCCTGAATTATCCACTTCACCCTAAACCCGCCCTCGAA
GCCGGTGTCCCGCTCAAACCCCGCCCCATGCCTCCGAGACCCGCCCCTCA
GACGTCGTGTCCCGTCCAAACCCCGCCCCCAGCTCCCCGAGTCCCGCCTC
TCTCCCTGCTCCCGCCTCCCGCTCGCAGACTCCAGCGCCCGTCCTGGCGC
GCGCCCGCCTGCGTCTGCACCCGGAAGAAGCCCCAGCGGCCGGAAAGTTG
AGGCAGTTCGCTGCTCGGTGTCCGCGGGAAGCGCAAGTCCTTCAGAGGCC
GGGCGAGAGCAGCGCGAAGAAGCCTGCGCGCCCCCGCGCAAGGCGGCCCC
CTCGAGCGGCCGCGCGCACGCCCCGCCCCCTCCAACGCCGCGCGGGTCGA
GCTGGGGCGACCACGGCCGCAGCGCGGTCCCGGCGACCAAGACAGTGCGT
GTTGAGCCCGTAAGTGACCACCGCAGCGTGAGGTCCCGGGGGATCGTTTC
CCTCCCGTGCTTAGCGTCAGGTCTCGTCCGCATCCTTTAATTTCTAAACT
CTCCGCAGGGCTGTGAGGCCTCAGCCAACCACCTGTGGATTAGAAGCGAA
TTTCCGAATGTTTTCTCAAGCATCCCTCCGCTAGGTTCTCGCTCGCCAGG
CGGTCTGGAGGCGCGCATTGAACGCGGACCCGTGAATGGCGGGCAA
CTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCACAGTGGCTGCTTCTAATAGTTA
CTCCTCTTTCCCTGAGAGCTGCCTCTTTAGTCAAAGTCCTCGAGAGGAGG
GTAAATTGACTTAATTTTTTGCTCTTCATTTTTTATATTATCCTTTATAT
CTTTATATTATCCTTTGTATCTTTACATTTTATATTATCCTTTGTATCTT
TATATTTTAGCTTCCTTTCTTTTTCTCTTTTTATATTTCTTAAGTTACTT
ATTTTTCTGCGCGCGTCTTCTTTTTCCTTTCTCTCTGTTTCTGATATGCC
TTCCTGGTACTCCTACAAAGTCGCTGCCCTTCCTTAACAGCTGGTCCCAC
ACAAACCCAGCAACAATTACCAGACCCACTGCGTAAGAAAGCATACCTCT
CAGAGACTTACCTTAATTTCTTTATACTTACTGGTACCACCGTTCCTCAG
CTGAAGAGTTCTGAATCCACGCAGTTGAATCCTTCTCAGCAGTCTGTTTT
GCAGGAACCTTTATTAACACCGCTCCCCAGCTGAAGAGTTCTGAATCCAC
GCCGGATCCTTCTCAGCAGTCTGTTTTACGGGAACCTTTATTTACCGCTT
CTTCTCCGCGATGCAGTTCTGAATCCTCCCTGTANCAGGGGGTCTTCGCT
CGGGGCCTGAAAAGGTTCTTTGTCCCAGTTTTTCGGACCACTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d07.b1 MSMg01no407_d07.b1 CHROMAT_FILE:
MSMg01no407_d07.b1 PHD_FILE: MSMg01no407_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:47 2005
         (218 letters)



>mm_chr10_53349551_53350168
          Length = 618

 Score =  375 bits (194), Expect = e-108
 Identities = 212/218 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatccacttcaccctaaacccgccctcgaagccggtgtcccgctcaaaccccgccccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatccacttcaccctaaacccgccctcgaagccggtgtcccgctcaaaccccgccccatg 359

                                                                       
Query: 61  cctccgagacccgcccctcagacgtcgtgtcccgtccaaaccccgcccccagctccccga 120
           |||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct: 358 cctccgagacccgcccctcagacgtcttgtccggcccaaaccccgcctccagctccccga 299

                                                                       
Query: 121 gtcccgcctctctccctgctcccgcctcccgctcgcagactccagcgcccgtcctggcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 298 gtcccgcctctctccctgctcccgcctcccgctcgcagactccagcgtccgtcctggcgc 239

                                                 
Query: 181 gcgcccgcctgcgtctgcacccggaagaagccccagcg 218
           ||||||||||||||| ||||||||||||||||||||||
Sbjct: 238 gcgcccgcctgcgtccgcacccggaagaagccccagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)