BAC Information

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BAC

Clone NameMSMg01-407D23
Chromosome10 (Build37)
Map Location 102,402,527 - 102,402,854
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
Downstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D23.T7 (MSMg01no407_d23.b1)MSMg01-407D23.TJ (MSMg01no407_d23.g1)
ACCAG505251AG505252
length815762
length of high quality
(start - end)		70 (39 - 108)469 (76 - 544)
definitionCHROMAT_FILE: MSMg01no407_d23.b1 PHD_FILE: MSMg01no407_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005CHROMAT_FILE: MSMg01no407_d23.g1 PHD_FILE: MSMg01no407_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CACTGTATTCAGCAGGCAGCAACAAGAGAGGGACAATGGGCTTGAGCTTC
CGAAACTCTAGAGTCTGTCCCAGTGACAGGCCTTCCCAGGAGGACCATCC
TACTTCCTATAGGCCACACCTCCNACATGACCCTTCTAATANTCTATGGA
GTCCATTTTATTCAAACCACACATGGNATTTTCGGGGGGNTTTCCCTCCC
GCTGCTTTGCCAGGATTTCCTATTGGACTTTTGGGAAGGTAGGGTCCCAT
TTTATGGTTTAAAAGAATTGGTTTTGGGGGGGGAAAATTCCCCAAATTAT
TTTTTAAAAATTTGTTTAACCGCGCTTTTAAAAAAAAAAATTAAAAANNC
CGGCCCCGGGGGAGGGGGGGGGAAAAATTTTGGGGGGTGGTTAAAGGGGG
AGAAACACCCCCACAAACTATGCGGGGAAAAAAATTTTTTTCTTTGAAAA
AAAAAAAAGGGTTTGCCCCCAAAAAAAAAAACTTTCAAAAACCCTCTCCC
CTCTATTTTTTTTTATATAAAAAAAGGGGTGGGCGGGGAGGGCTCCCCCC
CCCTCTCTTTTATTCCCCCCCCCAAAAAAAAAAAAAACCCCCCAANAAAC
CCCCCCCCCTTTCTTTTTTTTTTTTTTTTCCCCTCCCCCACCCGCAAAAA
TTTTTTCTTTTTCCTCCCCCTCCCGCCGTTCATTTTTTAATTTTTCCCCC
CCCCCCCCCCCCNNNNATATTCCCCTTTCCCTGCGCACATTTTATTACTT
CTCTGCCGGGAGGTG

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAACAGAATCAACT
AATGTGTATCCTGGACTGAAGCACCAATGAAAGAGCATACAGGGGCCGGG
TCTAGGCTTCCCCACACATATGTAGCATATATGCAACTGTTTGTTTGTTT
GGTTTTTTGTTTTGTTTTATACTCATTCACTACCTCTGGCTCTTACAATC
ATTTACCTCCTCTTTTACGTAGATTTCTATGGCTCAAAGGGAAGGGTGTG
ATAAAGACATCTCATTCAGATCTGAGAACACAGATGTTTCTTACTCTATG
CACATAGTCCAGTTGTCACATTGACATTTACTGCAAGAAGTACCTTCTGA
GAGTTGAGAGCTGTGCTGTTTTACGGGTAGAGCTCTACCATCAACAGTCA
CTTTAGTGTTGTGTAAAAATAAATTTTTAAATCCAAGTTTTCTTGTTCAG
GCCTTTAATTTTGACATATGACAGGCGTTGTCTGTATGAAATCAATGCAA
ATTTTATGAGGACCTCAGAGGTGATGAGAGTTTGTGAAGAAAATGGGATC
AATGTAAAAACTGACTGGAGAGAAATGCATATTCTTTTGTGGACTAAAAA
AGTTTGGGCCTACCACAAAACAACCTCCATTGGTTGCTTGGTATTGAAAA
GAAAAATGTTTCTTTCTGCCCTGGGGAATATGTGTTGGTCCCCCCCATTT
ATTTATATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d23.g1 MSMg01no407_d23.g1 CHROMAT_FILE:
MSMg01no407_d23.g1 PHD_FILE: MSMg01no407_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
         (469 letters)



>mm_chr10_102401986_102402854
          Length = 869

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 142 ttatactcattcactacctctggctcttacaatcatttacctcctcttttacgtagattt 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttatactcattcactacctctggctcttacaatcatttacctcctcttttacgtagattt 810

                                                                       
Query: 202 ctatggctcaaagggaagggtgtgataaagacatctcattcagatctgagaacacagatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctatggctcaaagggaagggtgtgataaagacatctcattcagatctgagaacacagatg 750

                                                                       
Query: 262 tttcttactctatgcacatagtccagttgtcacattgacatttactgcaagaagtacctt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttcttactctatgcacatagtccagttgtcacattgacatttactgcaagaagtacctt 690

                                                                       
Query: 322 ctgagagttgagagctgtgctgttttacgggtagagctctaccatcaacagtcactttag 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 689 atgagagttgagagctgtgctgttttacgggtagagctctaccatcaacagtcaatttag 630

                                                                       
Query: 382 tgttgtgtaaaaataaatttttaaatccaagttttcttgttcaggcctttaattttgaca 441
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgttgtgtaaaaataaaattttaaatccaagttttcttgttcaggcctttaattttgaca 570

                                       
Query: 442 tatgacaggcgttgtctgtatgaaatca 469
           ||||||||||||||||||||||||||||
Sbjct: 569 tatgacaggcgttgtctgtatgaaatca 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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