BAC Information

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BAC

Clone NameMSMg01-408G06
Chromosome10 (Build37)
Map Location 13,073,886 - 13,229,104
singlet/doubletdoublet
Overlap geneLOC100039475, Fuca2
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2
Downstream genePex3, Deadc1, Aig1, EG666859, Hivep2, Gpr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408G06.T7 (MSMg01no408_g06.b1)MSMg01-408G06.TJ (MSMg01no408_g06.g1)
ACCAG506120AG506121
length747754
length of high quality
(start - end)		492 (46 - 537)434 (74 - 507)
definitionCHROMAT_FILE: MSMg01no408_g06.b1 PHD_FILE: MSMg01no408_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:21 2005CHROMAT_FILE: MSMg01no408_g06.g1 PHD_FILE: MSMg01no408_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,228,617 - 13,229,104)(13,073,886 - 13,074,319)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGCTATACACAATGTTTACAGATTGTTCTGCAAGACATAGTA
TTATGAATAAACAGAGAGAATGGAAAGGTGGGTGGAGACAAGGAGGAACT
TTTAAAGATAAAATAAATCACACACTTCTGCGCAGGCAGACGGGAAAGAA
AGGAGGAGGCTGGAGATGAGGAAGTAGAACGGCTTGCTACTCCTTGCCTG
GAGGGCTTGGGATGTGGAGGAGAAAACGCAGGCTGGGTTAAGGCCAATTG
TGAGCTAATTAGACATTGTACAGATGTGACTGCTGGTGTACCACACTTAG
CTGTGGCAGTCTCCTGCAAGTGAGTGTAAGAAAGGGAAGGAATAAGGGAC
ACATGAGGAATTCATTGTAGTGACAGATCACTACACCCCGTAATCAAGTC
CCATTCTCTACCCCACACCCCGCTCCTGTCTCTGTGATTTTGAATACTCT
AGGTACCTCATCAATAATATTTGTCTCTTTGTGACTAAGTCACTTCATTT
TCAATGAATTCCTGAAAATTTTTTGTGTTGCAGCATTTCCTTCTTGCTGA
GGGTTGTTCTGGTGCTATGGACTGCAAAGTTGTATGTACTGGTATTGCGC
CCCGATACCTGGTCACCCTCCGTACAAGAAGGCCTTGGCCCCCAACCAGT
TTATTGGCCTTAAAAAAATGTTGGCCCCCGTTTTCCTATAATACATA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATAGACTACACAGTGTCCATATGT
CTGTTTGACAGCGTTCCATTGTTATACATTTATTTATCTCATCTTTGAGT
CTATCTTGGAAAGAGAGATGTGCTTTACAATGTCTGTCTGCATTTCATGA
GATATGTTATTAATAACTTATAAAAAGCAGAAAAATATAATTGCTCAAAA
ACTACTTGGGGAAAGAGTGGACACTGCCTAAAAGCCAGGCATAGTTATGT
AGATTCGCCTGGCTTTACCAGTCCTTGGCTGAGGCTTTCTGTTCACTGAA
TAACTCTCTTCATGAATGGGCAAGAGGAAGATGATTATTAAAGAGGTTGT
TTTATTCAGAGTTGTTGGGGAAGCTACAATCTAAATTATGATTTTGGAAC
CAAATAAATTATGGAAACTGCTTGTTGCTGAGGGGGAAAAATGTGCAAAT
GAACACGGAAACCAAGATAATTGAACATAAGCACTCCTCTAACTGTTGGA
AAGAGCCAGCGTATAACAGATGTTGCCTTATTACGACTGCTCTATACGTG
AATAATGCTGACCTGGCACCGAGAATCCACGTCTTTATTAAATAAAATTA
AATCCCCTTGTCTGGCTATTTGAACGGTCATCTCTTCAACGTTCTGTTCC
TCTTACCTAAAACATACTTAAATTTTCTCTTCTTCAACTATTTTGTTCTT
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_g06.b1 MSMg01no408_g06.b1 CHROMAT_FILE:
MSMg01no408_g06.b1 PHD_FILE: MSMg01no408_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:21 2005
         (492 letters)



>mm_chr10_13228477_13229368
          Length = 892

 Score =  890 bits (460), Expect = 0.0
 Identities = 481/488 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcagctatacacaatgtttacagattgttctgcaagacatagtattatgaata 64
           |||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 628 gaattcttcagctagaaacaatgtttacaaattgttctgcaagacgtagtattatgaata 569

                                                                       
Query: 65  aacagagagaatggaaaggtgggtggagacaaggaggaacttttaaagataaaataaatc 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aacggagagaatggaaaggtgggtggagacaaggaggaacttttaaagataaaataaatc 509

                                                                       
Query: 125 acacacttctgcgcaggcagacgggaaagaaaggaggaggctggagatgaggaagtagaa 184
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acacgcttctgcgcgggcagacgggaaagaaaggaggaggctggagatgaggaagtagaa 449

                                                                       
Query: 185 cggcttgctactccttgcctggagggcttgggatgtggaggagaaaacgcaggctgggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cggcttgctactccttgcctggagggcttgggatgtggaggagaaaacgcaggctgggtt 389

                                                                       
Query: 245 aaggccaattgtgagctaattagacattgtacagatgtgactgctggtgtaccacactta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggccaattgtgagctaattagacattgtacagatgtgactgctggtgtaccacactta 329

                                                                       
Query: 305 gctgtggcagtctcctgcaagtgagtgtaagaaagggaaggaataagggacacatgagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctgtggcagtctcctgcaagtgagtgtaagaaagggaaggaataagggacacatgagga 269

                                                                       
Query: 365 attcattgtagtgacagatcactacaccccgtaatcaagtcccattctctaccccacacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attcattgtagtgacagatcactacaccccgtaatcaagtcccattctctaccccacacc 209

                                                                       
Query: 425 ccgctcctgtctctgtgattttgaatactctaggtacctcatcaataatatttgtctctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccgctcctgtctctgtgattttgaatactctaggtacctcatcaataatatttgtctctt 149

                   
Query: 485 tgtgacta 492
           ||||||||
Sbjct: 148 tgtgacta 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_g06.g1 MSMg01no408_g06.g1 CHROMAT_FILE:
MSMg01no408_g06.g1 PHD_FILE: MSMg01no408_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:21 2005
         (434 letters)



>mm_chr10_13073686_13074519
          Length = 834

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatagactacacagtgtccatatgtctgtttgacagcgttccattgttatacatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatagactacacagtgtccatatgtctgtttgacagcgttccattgttatacatttat 260

                                                                       
Query: 61  ttatctcatctttgagtctatcttggaaagagagatgtgctttacaatgtctgtctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatctcatctttgagtctatcttggaaagagagatgtgctttacaatgtctgtctgcat 320

                                                                       
Query: 121 ttcatgagatatgttattaataacttataaaaagcagaaaaatataattgctcaaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgagatatgttattaataacttataaaaagcagaaaaatataattgctcaaaaact 380

                                                                       
Query: 181 acttggggaaagagtggacactgcctaaaagccaggcatagttatgtagattcgcctggc 240
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 381 acttggggaaagagtggacactgcctaaaagccaggcgtagttatgtagattcgcctgac 440

                                                                       
Query: 241 tttaccagtccttggctgaggctttctgttcactgaataactctcttcatgaatgggcaa 300
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tttaccagcccttggctgaggctttctgttcactgaataactctattcatgaatgggcaa 500

                                                                       
Query: 301 gaggaagatgattattaaagaggttgttttattcagagttgttggggaagctacaatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggaagatgattattaaagaggttgttttattcagagttgttggggaagctacaatcta 560

                                                                       
Query: 361 aattatgattttggaaccaaataaattatggaaactgcttgttgctgagggggaaaaatg 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aattatgattttggaaccaaataaattacggaaactgcttgttgctgagggggaaaaatg 620

                         
Query: 421 tgcaaatgaacacg 434
           ||||||||||||||
Sbjct: 621 tgcaaatgaacacg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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