BAC Information

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BAC

Clone NameMSMg01-408O24
Chromosome10 (Build37)
Map Location 129,304,783 - 129,305,263
singlet/doubletsinglet
Overlap genenone
Upstream gene1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813
Downstream geneOlfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408O24.T7 (MSMg01no408_o24.b1)MSMg01-408O24.TJ (MSMg01no408_o24.g1)
ACCAG506540AG506541
length767764
length of high quality
(start - end)		483 (42 - 524)338 (72 - 409)
definitionCHROMAT_FILE: MSMg01no408_o24.b1 PHD_FILE: MSMg01no408_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:06 2005CHROMAT_FILE: MSMg01no408_o24.g1 PHD_FILE: MSMg01no408_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATCAAGTGATAAGAAAGAAATCAATATTCCTTAAACAAACCTTTCTTC
TATGAAATATGGCTTGGAATGCAAGTTAATTCTTCACTTTAATAAATGGG
TAAACATATCTGTCCATCAAAATCAGGGCACCAGCCTGAGATTGTAAGTC
TATCTTACTGCTTACTAAGTCTCACCCAAGTATATTATTTGATACCAATG
ATTTGAATCATTTTTCTTAAACCACAAAATTAGAATTTATCTTTCTTTTT
TATTAATATAAAATTTATTTTAAAATACAAAAAATGTCAGTACTGACATT
TTTTAAATCATTAAAATAATTTTAATAGTTAAATGCCTCTTAAATATACA
TGATATCTTCTGAAGTTAAAAGAAATAGGCACTCAACCAGTTTTTAAAAT
CTATTTGGAACATTAAACACAATAGAAGTAGAAAAAAATCTCTTACAAAC
TACTTTATGAAAGGAAATTATGACAGGTTCCAGAGTAGACAGAAACTGTT
CCATCTTCAAGGGAAATATGCATTGTAACTGTGACTTCCTANAATGAATT
ANGCAGGGGTTCTTCTGTTTCTACCTTGTGGAAAATTTGAAAAGAATGGG
AATAGGGCTCCCTTTAATGCCGGGAAGGAATCCGGCCAAAAACAACTTGG
GCCGGGGTTTTTTTGGGTGGGTAATATAATGGTTTGAGAAATTTAAAGAG
GGCTCTCTTCTCTTAGT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCACCTTTGACTTCCTGCTTTTGCTACTG
GGTCATCAACTTTTTATTGATAGGTGTTGGTTCCACCCGGTGTACAAGAG
ATTACCTCTTCAAGTCATTGAGATTGTAATTACATCACTGTTCTCTCCTC
TTTCCTTCTTCAAATACACTATATATTCCTCCCCATTCTCCTTCAAATTC
ATGGGATCTTATTATTTCATGCACATATAATATATATTAATTATAATTTC
ATATATTATGCTCAGCTTTTTTAATGTTACTTATACACACACACACACAT
ATATATATATAGATATATATGTGTGTGTGTATATATATATATATGTATAT
ATATATATTTNNANANANATATATATATATATATATATATGTGTGTGTGT
GTGTNTATAAGATATTATGAAAGGGGAGGAGAATGTGNGGGAATATATAG
TGTATATTGAATATGGGTGAGAGAAAAAAAGAGATGTAATTATTGTGGGA
GAGAGGGGAGAAGTAATATTGTGTATTTTGGGAGGAAGAGAGGGAGAAGA
GGTATTTTTTATTTTNTGGGGGGGTGGGGAGAAATTTTGTTGGAGGGGGG
GGGGNATTATTTATTATAAAAAATGGTTGGGGGGTAAAAAAAAAGGGGGA
AAGGGGGGGGTTTTGGGGGGTTTTTTTTTGTGGTAAAAAAATGGGGGGGG
GGGGGGGGGGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_o24.b1 MSMg01no408_o24.b1 CHROMAT_FILE:
MSMg01no408_o24.b1 PHD_FILE: MSMg01no408_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:06 2005
         (483 letters)



>mm_chr10_129304580_129305462
          Length = 883

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%), Gaps = 1/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatcaagtgataagaaagaaatcaatattccttaaacaaacctttcttctatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatcaagtgataagaaagaaatcaatattccttaaacaaacctttcttctatg 263

                                                                       
Query: 64  aaatatggcttggaatgcaagttaattcttcactttaataaatgggtaaacatatctgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatatggcttggaatgcaagttaattcttcactttaataaatgggtaaacatatctgtc 323

                                                                       
Query: 124 catcaaaatcagggcaccagcctgagattgtaagtctatcttactgcttactaagtctca 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 catcaaaatcagggcaccagcctgagattgtaagtctatcttattgcttactaagtctca 383

                                                                       
Query: 184 cccaagtatattatttgataccaatgatttgaatcatttttcttaaaccacaaaattaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccaagtatattatttgataccaatgatttgaatcatttttcttaaaccacaaaattaga 443

                                                                       
Query: 244 atttatctttctttttt-attaatataaaatttattttaaaatacaaaaaatgtcagtac 302
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttatctttctttttttattaatataaaatttattttaaaatacaaaaaatgtcagtac 503

                                                                       
Query: 303 tgacattttttaaatcattaaaataattttaatagttaaatgcctcttaaatatacatga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgacattttttaaatcattaaaataattttaatagttaaatgcctcttaaatatacatga 563

                                                                       
Query: 363 tatcttctgaagttaaaagaaataggcactcaaccagtttttaaaatctatttggaacat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatcttctgaagttaaaagaaataggcactcaaccagtttttaaaatctatttggaacat 623

                                                                       
Query: 423 taaacacaatagaagtagaaaaaaatctcttacaaactactttatgaaaggaaattatga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaacacaatagaagtagaaaaaaatctcttacaaactactttatgaaaggaaattatga 683

            
Query: 483 c 483
           |
Sbjct: 684 c 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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