BAC Information

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BAC

Clone NameMSMg01-409A04
Chromosome10 (Build37)
Map Location 129,714,087 - 129,714,664
singlet/doubletsinglet
Overlap geneNeurod4
Upstream geneOlfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409A04.T7 (MSMg01no409_a04.b1)MSMg01-409A04.TJ (MSMg01no409_a04.g1)
ACCAG506596AG506597
length773774
length of high quality
(start - end)		582 (46 - 627)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no409_a04.b1 PHD_FILE: MSMg01no409_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:12 2005CHROMAT_FILE: MSMg01no409_a04.g1 PHD_FILE: MSMg01no409_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGGACATATAAATGTGGCTTCAAAAACATGGTGACCAAAAAGT
ACAGATAGAGCTCTAACCCAATATTTTCAATTCCTGATTCCTAATCCTAG
TTTTATTTATTTTATTATCTTATATAATAAAAATATAAGGTATAGTTTAC
ATTATTCAACACAAAAGTATCGCAAAGATAATGTAAAACAATATCTTTGT
GTTTATTTTGAATTTATTTTTGGAATTTCAAAAGTCTAACCCATTCTTGC
ATATATTTCTTCATTCAAAATCAAATTCTCCCCACAGATGAATAAATAAA
ATACACTGTATATGCTGTTGTTATCTGAATGCCACCTCGTCGGATTGGTA
CAGAAGTAAATATGATAACTGCCCAATAGTCTTCACTTGTCATCCAGTCT
AGACAGCACACAATCTGAAGTCAAATCAACTGGATCCAAATTTCAATTTT
TCTACTTACTATATTTGTGACTTAAACTTTTATCTACCTTAATCTTCTCC
TCCTAAAATGGGAGTAGTAGTAATAGATCTAACTCAGCATAGAATGGGTT
GATGCATTAAACCCTTGGAATTAATGCCAAGTGTCATGAATTCCACATAA
GGGTGAGAAATAACCACGCCTAAATATCATGAGTCACAATGACAATAATT
ACACATATAATTTATAAATATGTGTTTAATGCTAATTTCAGGACCATGAA
NATCAATGATCTATTTCAGTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACCCCATCCCCCTTACACTTT
GACTTTGAGTGTGTATTCCCCAACTCAACCCCAACCCTCACCCATACCCA
CAACATCACTCTCCCTAGCATCCCTTTTGCCTGGGTCATCAAGTCTCTAT
AGGATATGGTGCATCTAATCTAACTGAGCTAGACTAGGAAGTCCTCTGCT
ACATATGCACTAGGGGACAAAGGCCATCTCATGTATGCTCTTTGGTTGGT
GGATAAGACTTTGATAGCTTTGAGTGGTCTGGGTGAGTTGATACTGTAGT
TCCTCTTATGGTATTTCTATCAGCTTCATCTCCTTCAATCCTTCATGTAA
CTCTTTCATAGTTGTCTGTGTCCTCAGTCCAATAGTTGGCTACAAGTGTC
TTCATCTGTCTTAGACAGCTGCTGGTAGAGCCTCTCAGAAGACAGCCATG
TTAGACTCCTGTCTGANAACACAACATGGCATCAGTAATAGTGTCAGAGT
TTGGTGGCTGTACATGGGATGGATCCCAAGATGGGCAGGTGCTTCAGTGG
CAATAAAGACAGTTCTGAAGTAAGAACAGAACACTTATTGGTGGGAATCA
TCACAACATAGGAATTGTATTAAATATTCACAGCATTACAAAGAGGGAGA
ACCTCAACTGTAAAAGGAAAATAAATTTGTGGGTGGTGATTGTACTCATA
AACGACTATGTCCCTGTAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_a04.b1 MSMg01no409_a04.b1 CHROMAT_FILE:
MSMg01no409_a04.b1 PHD_FILE: MSMg01no409_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:12 2005
         (582 letters)



>mm_chr10_129713883_129714864
          Length = 982

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtggacatataaatgtggcttcaaaaacatggtgaccaaaaagtacagataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtggacatataaatgtggcttcaaaaacatggtgaccaaaaagtacagataga 264

                                                                       
Query: 65  gctctaacccaatattttcaattcctgattcctaatcctagttttatttattttattatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 gctctaacccaatattttcaattcctgattcctaatcctagttttatttattttattatt 324

                                                                       
Query: 125 ttatataataaaaatataaggtatagtttacattattcaacacaaaagtatcgcaaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatataataaaaatataaggtatagtttacattattcaacacaaaagtatcgcaaagat 384

                                                                       
Query: 185 aatgtaaaacaatatctttgtgtttattttgaatttatttttggaatttcaaaagtctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgtaaaacaatatctttgtgtttattttgaatttatttttggaatttcaaaagtctaa 444

                                                                       
Query: 245 cccattcttgcatatatttcttcattcaaaatcaaattctccccacagatgaataaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccattcttgcatatatttcttcattcaaaatcaaattctccccacagatgaataaataa 504

                                                                       
Query: 305 aatacactgtatatgctgttgttatctgaatgccacctcgtcggattggtacagaagtaa 364
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 505 aatacactgtatatgctgttgttatctgaatgccaccttgtctgattggtacagaagtaa 564

                                                                       
Query: 365 atatgataactgcccaatagtcttcacttgtcatccagtctagacagcacacaatctgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 atatgataactgcccaatagtcttcacttgtcatccagtctagacagcacacattctgaa 624

                                                                       
Query: 425 gtcaaatcaactggatccaaatttcaatttttctacttactatatttgtgacttaaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcaaatcaactggatccaaatttcaatttttctacttactatatttgtgacttaaactt 684

                                                                       
Query: 485 ttatctaccttaatcttctcctcctaaaatgggagtagtagtaatagatctaactcagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttatctaccttaatcttctcctcctaaaatgggagtagtagtaatagatctaactcagca 744

                                                 
Query: 545 tagaatgggttgatgcattaaacccttggaattaatgc 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagaatgggttgatgcattaaacccttggaattaatgc 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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