BAC Information

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BAC

Clone NameMSMg01-409F15
Chromosome10 (Build37)
Map Location 24,311,612 - 24,312,069
singlet/doubletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537
Downstream geneCtgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409F15.T7 (MSMg01no409_f15.b1)MSMg01-409F15.TJ (MSMg01no409_f15.g1)
ACCAG506857AG506858
length806767
length of high quality
(start - end)
461 (48 - 508)400 (60 - 459)
definitionCHROMAT_FILE: MSMg01no409_f15.b1 PHD_FILE: MSMg01no409_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005CHROMAT_FILE: MSMg01no409_f15.g1 PHD_FILE: MSMg01no409_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTACATGACTGAACCTAGGACACACCAGAAACACTGAGAAG
CCAGTTCCCCAAGGATCCTAGGACAAATCTCCCCGTTTCCAGATGCCCTT
ATAGGGCTAGAGTCATACTTCCTATAATGCTGACAGCCCAGTGTATGTGT
CGCACATGGGTTTAGGCTTTGAGTCAGGTTCCACCAGTATGTTTCCCTGA
GACTTTTGATTTCCTCTTTGAGGGCTGGCACTGACTTCCTGCTTGCTCTT
ATAAGAAAATGTCTACAACTGAAAACTGAAAATCTGCAAGATTCCTTCCT
TAAGTACACAAACACTCCAAGTCTGGTCACTTTGCTATTGTTCTGCAGGA
TTCTCTCTCTGTCTTATAGCTGATCAAGTAACCTTTTTAGAGGGGGGGCA
AAAAACATTGTACAAGACTCAAGCAAAAGAGCTGAGTACATCATCCTACC
CATGCATACCGTAAGTGGCCACCTTAGTGAATTCCTCATCTACTGGGAGG
GGTGGTTGGGGGAAAAAGATCTATTTGAAATCACATATTTGAGTTCCTTG
TTCCTCTTTCTCCTTTTAACTTCCATTTTCTATATATAATCCCACAATTG
TTTTCTCTCCCGCGATCCCTCTATAATTTGGTCTAATTATATACTCCTCT
TCTCTCGCTTTATTCTCCTTCTGCATCTTCTCGTTTGCTGCTACTCTATG
GATTATGATCATTCACATTATTTCGCTATATATCCTGTCTACCCTGTTCC
TATCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATGCCAGTACCATGGGATGATCACCAAGAACAGCAGCAGCA
GTGGAGTGGAATCAACCTGAACTTAGAATGCTACAGAGGGCAGAGCTGAA
GAAGTGATGCCAGCTCTTTGAAGGAGCCCAGAAGATCATGTGTGGCTCCC
AGACATTGGAACAAGAAGATCCCAAGATTTTTGAGATGCCAGAGCCATAG
GATATCTGCTGAGGAATGCTGCTAACAGGGAGTGGGACCAGCCCAGGAAA
AGAAGTGTGTTGCAATCAACAAAGATGAAAAAAGAGTTGGAGTTCTGAAA
ACTGCTTTGACATCAGACATGGAGATGCAGAATTTGGAGTTTGCCCAGCT
GGTTTCCTGTCTTGTTTTGGGGTTACAGTTAAGTGACTTACTGTTGTTCT
TGGATGGATCTCANAAGACTTTGAACTTTGGACTTTTACATTGTTGATAC
TTCTATAGACTATGAGGTCTTTGTAAATTGGACCAAATGGTCTTTTTCAA
TTTTGCTTTGGGTATATATGGCCCCATTAACTCCTGGGTTTGTAACATTC
CTAGGGATAGCTTGGCTTTTTTGGTGCCCCGCTTCTTTCTGGTTCTTCTT
TTTTTTCTTTGTCGCGTTCTCGCCCGGTTGCCATTTGGTCGTGATTTTAC
CCGTTTTCTGTGATCCTTATACTCTCTTTTTTTCCCGTCTATTCTTCGTT
TCGCCTCTTAGCTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_f15.b1 MSMg01no409_f15.b1 CHROMAT_FILE:
MSMg01no409_f15.b1 PHD_FILE: MSMg01no409_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:41 2005
         (461 letters)



>mm_chr10_24311409_24312269
          Length = 861

 Score =  833 bits (431), Expect = 0.0
 Identities = 452/459 (98%), Gaps = 2/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttacatgactgaacctaggacacaccagaaacactgagaagccagttcccc 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattcatttacatgactgaacctaggacacaccagaaacactgggaagccagttcccc 263

                                                                       
Query: 64  aaggatcctaggacaaatctccccgtttccagatgcccttatagggctagagtcatactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaggatcctaggacaaatctccccgtttccagatgcccttatagggctagagtcatactt 323

                                                                       
Query: 124 cctataatgctgacagcccagtgtatgtgtcgcacatgggtttaggctttgagtcaggtt 183
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 324 cctataatgctgacagcccagtgtatgtgtcgcacatgggttttggctttgagtcacgtt 383

                                                                       
Query: 184 ccaccagtatgtttccctgagacttttgatttcctctttgagggctggcactgacttcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaccagtatgtttccctgagacttttgatttcctctttgagggctggcactgacttcct 443

                                                                       
Query: 244 gcttgctcttataagaaaatgtctacaactgaaaactgaaaatctgcaagattccttcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcttgctcttataagaaaatgtctacaactgaaaactgaaaatctgcaagattccttcct 503

                                                                       
Query: 304 taagtacacaaacactccaagtctggtcactttgctattgttctgcaggattctctctct 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 taagtacacaaacactccaagtctggtcactttgctattgttctgctggattctctctct 563

                                                                       
Query: 364 gtcttatagctgatcaagtaacctttttagagggggggcaaaaaacattgtacaagactc 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcttatcgctgatcaagtaacctttttagagggggggcaaaaaacattgtacaagactc 623

                                                  
Query: 424 aagcaaaagagctgagtacatcatcct-acccatgcata 461
           ||||||||||||||||||||||||| | |||||||||||
Sbjct: 624 aagcaaaagagctgagtacatcatc-tcacccatgcata 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)