BAC Information

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BAC

Clone NameMSMg01-410B15
Chromosome10 (Build37)
Map Location 92,273,761 - 92,424,772
singlet/doubletdoublet
Overlap geneGm872, 4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410B15.T7 (MSMg01no410_b15.b1)MSMg01-410B15.TJ (MSMg01no410_b15.g1)
ACCAG507430AG507431
length706744
length of high quality
(start - end)
252 (78 - 329)408 (79 - 486)
definitionCHROMAT_FILE: MSMg01no410_b15.b1 PHD_FILE: MSMg01no410_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:44 2005CHROMAT_FILE: MSMg01no410_b15.g1 PHD_FILE: MSMg01no410_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,424,521 - 92,424,772)(92,273,761 - 92,274,168)
sequence
CTTTCTTTCTATAATTTGGCGGCGCTAAACGACTCACTATATTCCGAGGA
TCCGCGGAATTCCATGAGCTTTCCCAGCTGCTCATGTGACCTCTCTCCCA
GTAGTCTGTCTATCCCTGTTCAGTTGCTCCAGGTGCTAAGACTTGTAGCT
ATTAAGAATCTGTCACACCATGACCTAGGTTATGGAAATAAAATAGAAAT
GATATAATATGCAATAACAAACCTATTGAAAATTAGCAAACACATTAAGA
TATAATATAACATTTCTGAAGGAAAGTATCTAATAACAATATCATGAAAG
ACAAAGCATGTAAATTAAGCTACTTATATGTTTTGTTACAATATAACTTT
AAGTGGGATGTGATGATTTAAGGATGTATTTGCCATAATCCTGGAGTAAT
GACAGCACCAAAAAGTGATAGCTAAAGGCCCAACAATGTGAGACTAAGTA
ATACTCAATTAACTTAAGAGAAGGAAAGAACTATTAGATACTCAAGCATA
CAGAGAACAAATTGAAAACACATATCAAGTCCTGTGGTTTGAATGAAGAC
AGACCTCATAGGCTCACAGAGAGATGTTTCTATTCATAGGATGTATAGGT
ATGGTTTGTGCTGCATCGCTTTGCCTCCTCTCTCTTCTTTACCTTATCTC
CTTCCTTCCTTTCCTTTTTTTTTCTCCCCCCTTCTCCTCTTTTCCTTCTT
TTCTTN
TTCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTCAGCGAGGCCATGTTGC
TCAGACTGTAATGGACACCACGTTCACACACTGTGGAACTGGCTGACTTG
AAACCGGAGCCCTGAACACCTCATGTGACCTTGTTGCCACAGACTTGGAG
AAAGCGCTCAGCTCAGCATTCCTAGCCAGATGTGGTGTGAAGCTTGCTGC
ATTTGGTAGGTGTCACAGAGAGGTGGGGTGACCCTTAGTCAGGCTTTGCC
CTTTTCCTTTCAGAGAAACATTCTTGATTTCAGAGACGGACCTCCGAGCA
ACTCCGACATGCTAAAGCTAATTCTCGTACTTAGTCCGAATCCTCGTCCT
CTTTGACCTACAGTGAGATTTGAAATGCTTCCTAACTTGTTTTCTGGCCT
TGAAATCCCTGTTTCCACCTCTCTTGTCACTGTCATGGTCATCAAATTGT
TGGGTGAATGCCATTCATCTTTCAATTCCTCCCATCCCCAGACTGATTTC
CACACAGCGCATTCCTATAGAGCAAAGTCCATTCACCATTTTTTTATTCC
CTATCCGTGGACTGCTCCCCACTATCCGTGTGTTCAAATGGTACCCATAT
ATGATTTACACACCTTCACTACATCGCTACCTATGTATTATTGCGCCCTA
ACCTGTTTATTTACCATTCTTCTCTTTACACTTGCAATTCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_b15.b1 MSMg01no410_b15.b1 CHROMAT_FILE:
MSMg01no410_b15.b1 PHD_FILE: MSMg01no410_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:44 2005
         (252 letters)



>mm_chr10_92424321_92424972
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctcatgtgacctctctcccagtagtctgtctatccctgttcagttgctccaggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgctcatgtgacctctctcccagtagtctgtctatccctgttcagttgctccaggtgct 393

                                                                       
Query: 61  aagacttgtagctattaagaatctgtcacaccatgacctaggttatggaaataaaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagacttgtagctattaagaatctgtcacaccatgacctaggttatggaaataaaataga 333

                                                                       
Query: 121 aatgatataatatgcaataacaaacctattgaaaattagcaaacacattaagatataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatgatataatatgcaataacaaacctattgaaaattagcaaacacattaagatataata 273

                                                                       
Query: 181 taacatttctgaaggaaagtatctaataacaatatcatgaaagacaaagcatgtaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taacatttctgaaggaaagtatctaataacaatatcatgaaagacaaagcatgtaaatta 213

                       
Query: 241 agctacttatat 252
           ||||||||||||
Sbjct: 212 agctacttatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no410_b15.g1 MSMg01no410_b15.g1 CHROMAT_FILE:
MSMg01no410_b15.g1 PHD_FILE: MSMg01no410_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:44 2005
         (408 letters)



>mm_chr10_92273561_92274368
          Length = 808

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctcagcgaggccatgttgctcagactgtaatggacaccacgttcacacactgtggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctcagcgaggccatgttgctcagactgtaatggacaccacgttcacacactgtggaa 260

                                                                       
Query: 61  ctggctgacttgaaaccggagccctgaacacctcatgtgaccttgttgccacagacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctgacttgaaaccggagccctgaacacctcatgtgaccttgttgccacagacttgg 320

                                                                       
Query: 121 agaaagcgctcagctcagcattcctagccagatgtggtgtgaagcttgctgcatttggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagcgctcagctcagcattcctagccagatgtggtgtgaagcttgctgcatttggta 380

                                                                       
Query: 181 ggtgtcacagagaggtggggtgacccttagtcaggctttgcccttttcctttcagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgtcacagagaggtggggtgacccttagtcaggctttgcccttttcctttcagagaaa 440

                                                                       
Query: 241 cattcttgatttcagagacggacctccgagcaactccgacatgctaaagctaattctcgt 300
           ||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacatgagttcagagacggacctccgagcaactccgacatgctaaagctaattctcgt 500

                                                                       
Query: 301 acttagtccgaatcctcgtcctctttgacctacagtgagatttgaaatgcttcctaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagtccgaatcctcgtcctctttgacctacagtgagatttgaaatgcttcctaactt 560

                                                           
Query: 361 gttttctggccttgaaatccctgtttccacctctcttgtcactgtcat 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttctggccttgaaatccctgtttccacctctcttgtcactgtcat 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)