Query= MSMg01no410_d20.b1 MSMg01no410_d20.b1 CHROMAT_FILE:
MSMg01no410_d20.b1 PHD_FILE: MSMg01no410_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:55 2005
(523 letters)
>mm_chr10_50888947_50889863
Length = 917
Score = 582 bits (301), Expect = e-170
Identities = 379/409 (92%), Gaps = 12/409 (2%)
Strand = Plus / Minus
Query: 6 gaattcaatggagtttacagagcaagactaaagatcaagagtactgggccataaattagc 65
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcaattgagtggagagagcaagactaaagatcaagagtactgggccataaattagc 344
Query: 66 agttttgtatgtgagatactctgcatatgtgtgcctcaattttcctccttgaaatataaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agttttgtatgtgagatactctgcatatgtgtgcctcaattttcctccttgaaatataaa 284
Query: 126 ggctaagtaatgtctacatttgtttttactgttgtagatctctagtggtgcaatgttgtt 185
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 283 ggctaagtaatgtctacagttgtttttactgtt------ctctagtggtgcaatgttgtt 230
Query: 186 cataaaagaatataacacaatgagcccttctggtcccc-accagcacctgggtatcttgg 244
|||||||||||||||||||||||||||||| ||||||| || |||||||||||| | |||
Sbjct: 229 cataaaagaatataacacaatgagcccttccggtccccgac-agcacctgggtagcatgg 171
Query: 245 gcacagagtctgtggacacccgcaggctatccacaatattcctccactggattttaagac 304
|||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 170 gcacagagtctgcggacacccgcaggctatccacaagac-cctccactggattttaagac 112
Query: 305 ctctggtgagtggaacacagctgctgctccaatccaatcg-tgagggacctgagactgca 363
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 111 ctctggtgagtggaacacagctgctgctccaatccaatccatg--ggacctgagactgca 54
Query: 364 ttaattagggaagcagaaaacccggcttgatcaggggcacaaatccctt 412
||| ||| |||||||||||||| ||| ||| ||||||||||| ||||||
Sbjct: 53 ttatttatggaagcagaaaacctggcctgaccaggggcacaagtccctt 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 917
Length adjustment: 10
Effective length of query: 513
Effective length of database: 907
Effective search space: 465291
Effective search space used: 465291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_d20.g1 MSMg01no410_d20.g1 CHROMAT_FILE:
MSMg01no410_d20.g1 PHD_FILE: MSMg01no410_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:55 2005
(448 letters)
>mm_chr10_50657575_50658422
Length = 848
Score = 859 bits (444), Expect = 0.0
Identities = 447/448 (99%)
Strand = Plus / Plus
Query: 1 ccatggtctacactgtcttcagaaggaggtgattagagaaatactgacagtgatggggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggtctacactgtcttcagaaggaggtgattagagaaatactgacagtgatggggaa 260
Query: 61 gacaaggtgtttgacttctgtttgaatctttgttgctcttgtagaatatttttactctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaggtgtttgacttctgtttgaatctttgttgctcttgtagaatatttttactctca 320
Query: 121 ttgaatgatttgaatagtcattgtcagatttcaaaaagtactggttccaggatttttcca 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatgatttgaatagtcattgttagatttcaaaaagtactggttccaggatttttcca 380
Query: 181 tagaaaccaaagtctatgaagtcctctatatcaaatggaatatttgtaaataatttacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaaccaaagtctatgaagtcctctatatcaaatggaatatttgtaaataatttacat 440
Query: 241 acaatcccttgttgctttaatcttttctaggtacttaaaattcctaaaatagtatagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatcccttgttgctttaatcttttctaggtacttaaaattcctaaaatagtatagatg 500
Query: 301 ctgtgtaaacagttgttgtaccttattgtctatagaacaatctgagaaaagcctgtatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgtaaacagttgttgtaccttattgtctatagaacaatctgagaaaagcctgtatgt 560
Query: 361 ggttcaggacagatgcaattagaaatattctcaatccaatattatttggctccacagatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttcaggacagatgcaattagaaatattctcaatccaatattatttggctccacagatg 620
Query: 421 tgtaacttttagctgaagatgctgactg 448
||||||||||||||||||||||||||||
Sbjct: 621 tgtaacttttagctgaagatgctgactg 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
