BAC Information

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BAC

Clone NameMSMg01-410K02
Chromosome10 (Build37)
Map Location 58,695,076 - 58,695,315
singlet/doubletsinglet
Overlap genenone
Upstream gene4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57
Downstream geneLOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410K02.T7 (MSMg01no410_k02.b1)MSMg01-410K02.TJ (MSMg01no410_k02.g1)
ACCAG507834AG507835
length744756
length of high quality
(start - end)
241 (86 - 326)383 (82 - 464)
definitionCHROMAT_FILE: MSMg01no410_k02.b1 PHD_FILE: MSMg01no410_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:25 2005CHROMAT_FILE: MSMg01no410_k02.g1 PHD_FILE: MSMg01no410_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAACGA
GGGGNGGAATTCCAGGACATCACGAGAAACACAGAGAAACTCTATGTCAG
ACAAACAAATAAGTGAATTGATTAATTAATTAGATTAAAAGCAGAGGCCA
TTTTGCTTGCTAGCCTGGTTTAAGTTCCAGATCACTCTTTTCTGAAAAGA
AATAAATAAATGGCCCTGCTGAGCACTTTCCCTTTGTTCCTGTGTTCTTT
GTGTGCTACTAAGATTACTCCTTTCCTACAGGCACTTGAGCCTGAGGCTC
TTAGAATCCAGACACACACACACACTTTCATATTTTCACACACTGACCGA
TGACTGAAACTTGCCTCCAGCATCAGTGACCTCCAGGAGGCCCTGCTCGT
GAAAAAAGTTATCTATAACATCTATGACCACACCTTGGAGCACGCGCAGT
TATCTCCGCAGTGAGAACAGCTTGTGTGCTCAAGACCAGAATTCTTGGAA
CTACTTTGTAACACTAGAGCGGAAAGAACCTTACTTTGAAGGAGACTCTT
TAACTAAGTATGCATATTGCTTCCTTCCCCAGACCCTCCTCCAGCAATCC
TATCACTCTCATTATTACCTCTGCTAGACTTAGGAGTCACTGAACCCGTC
TCTTTGTCCCTCCTTCCTATATATCCCACTACTTAACTCTCCTCTTTCCC
CTTTTTCCCAATTACTCTCTTTAATTGGTACTTCTCCGATGTTT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAATTTGGAGATTGAT
TTTGATAGGATGGCCATTTTCACGGTGTTAAATTTCCTGATTCCTGAGTG
TGGGAGGGTCTTTCCATCTTCTAGTGTCTTCTGTCATTTCTTAAACTTTT
CATTGTAGAAGCTTTTTGTTTCTTTGGTTTGTGCGGGTGTTATGTTATGT
GAATATGTTTGTGTTTTAATCCCAGGTATGGGATATGGGGCTGCTTCCGT
TTGTCCACAGCCACTAACTATGATTGTTTTTTATGAGGGGGCATGGCTTT
TGTCAGCTGCAGATAGTTTAATTCTGGGGACTCTGGAGAGGGAATAAACG
CCAGAGCCCAGAGAGGGACTGAGGCACTCTGAAGAAGAAAGAGGAGGAAG
AGGAGGAGGAGGAAGAGGCGACTGCTGTTGGTCCCTGCTACTCCAGGTTG
CTATTGCGGTTTGATAACAAGCCGGAGATATTCTGATGACTTCGATAGGA
CTTACTCCAAGGAACCCGTATTTGGAAGTAGTCTGTTTTGCTGGCCTCAA
GAGATCTACGTTTCCTCACTTTCCCTCTGACTCCTTCTCTCCTTATCTAC
TGATGACTGCCGTTTCTTTCCCTTCCTCCCTTTTCCCCCCTTTTCCTCCC
TTATTCCCCCTTTTTCCCTCCCTTTTCTCCTTCCCCTTCCATTATCTCCC
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_k02.b1 MSMg01no410_k02.b1 CHROMAT_FILE:
MSMg01no410_k02.b1 PHD_FILE: MSMg01no410_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:25 2005
         (241 letters)



>mm_chr10_58694876_58695516
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaactctatgtcagacaaacaaataagtgaattgattaattaattagattaaaagcaga 60
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gaaactctgtgtcagacaaacaaataagcgaattgattaattaattagattaaaagcaga 260

                                                                       
Query: 61  ggccattttgcttgctagcctggtttaagttccagatcactcttttctgaaaagaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccattttgcttgctagcctggtttaagttccagatcactcttttctgaaaagaaataa 320

                                                                       
Query: 121 ataaatggccctgctgagcactttccctttgttcctgtgttctttgtgtgctactaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaatggccctgctgagcactttccctttgttcctgtgttctttgtgtgctactaagat 380

                                                                       
Query: 181 tactcctttcctacaggcacttgagcctgaggctcttagaatccagacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcctttcctacaggcacttgagcctgaggctcttagaatccagacacacacacacac 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)