BAC Information

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BAC

Clone NameMSMg01-410P08
Chromosome10 (Build37)
Map Location 85,806,724 - 85,807,111
singlet/doubletsinglet
Overlap geneSyn3, Timp3
Upstream geneBtbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410P08.T7 (MSMg01no410_p08.b1)MSMg01-410P08.TJ (MSMg01no410_p08.g1)
ACCAG508085AG508086
length759864
length of high quality
(start - end)
393 (52 - 444)97 (85 - 181)
definitionCHROMAT_FILE: MSMg01no410_p08.b1 PHD_FILE: MSMg01no410_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:51 2005CHROMAT_FILE: MSMg01no410_p08.g1 PHD_FILE: MSMg01no410_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAGTTTTCCGTGCGTTGTCATTACTACAATGACAGCC
TAAAGATCAGACTGTCATACAAGACAAACCTAATGGATTGACTGCCAAGA
GCTGTTGAAGAGGCAACCTATTTCTAGCTAGGTTAAAGCTGAGATACCAT
GAGATCAGGACACAACCAGATGCACAATGGAGCCAAGGCTGCCAGGCAGG
AGTGGGTAAGCAAGCCAGACCCTTAACCTGAGGAGCCAGGTGTCTGCAAC
CCTCTGGATGTCACTGACTCAAGCTTCTTGCAGACCACCCCAGAGCAAAG
GAGTCTCAGTGCTCCTGCAGACACTTACCTGTCAGCAGGTACTGGTATTT
GTTGACTTCTAGCTTGAGGCCTCAAAGACTTTCAGAGGCTTCCGTGCGAA
TGTACTGCACGTGGTGCATCTTACTGAAGCCTCGTCACATCTGTGGGTCA
AAGAAATTTGAGTGTTAGAGAGAGCCCAGTGCTCTATCTGCATGCCTGCC
GTGCATCGCTCTGCATATCCTCTTGCCCCCCTGTGCCCTCCCTTACGTGC
TTCGTCATGATCCATGTTCCTCACGGTCCCTTTGACCATTCTTTGTTCCT
TCCTCCTCTTTTTTCCCTTTCCCCTTTTTCCTTTCTTTTCCAACCCCCCT
CTTTTTACCTTTCTTCTCTTTTTCGCCCCCTTTCTCCCTTTTTCATCCCC
CTTTCCCCC
NTGAATTAAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAACTTCTAGGCA
GGGACCAAGAGCTAGGGTTCACCTTGAGTCACCTACTATGTCTTAAGGAG
CCTAAAGTTAAGTGGGGGTGGGGGTGGGNGGCCNTNNNNNNNTNNNNNNT
NNNNNTTTCNNTNNTTTTCCTTTNTTTNCCTTTTCTCTTTTTCCCCTCCC
TCGCCCCTTTTTTCCCCTTTGGCCTCTCTCCTTCTCCGCCTTGTGCCCCC
CCTTCTCTCCCCCTCCCTTCTCTTTTTTTTTTTTTCCCCCCCCCCGCCCG
CTGCCTCTTTTCCCTTTTCCTTTTCTTTCCCCCCTTCCCTCTGCCGTCCC
CTCCTCCTTTCTCTCTTCCTTTTCTTCCTTCTTCCCCCTTTCCCTTCCCT
CTTTCCCTCCCCTCCCCCCCTTCTCTTTCCCTCCCTCCCCTTCTCCCCCC
CCTTTTTCCTCTTCTCCTTTTTCCTCCCTCCCCTTTCCTCTTCCCTTTCC
CTTTCTCCCTTCTTTCCCTCCTCTCCTCCTTCTTGTCTCCCCCCACCCCC
TCTTCCTCCCTCTCCTCCTCCCCCCTTCTTTCCCCTTCCTCTCCCCCTCC
TCTTTCTTCCTATATTCTTCACCTCTCTTCTCCCCCCCTACCCTTCTCCC
CTTTCTCCTCCTATCTTCCCCTCTACGTTACCCTCCACCCCCCTTCCTTT
TCGTCCCTCTTCTCCCCTTCCTCTTCCCCTTCGCTTCTCCCTTCCCCCCC
TTTCTTTTCCCCCTTTCCTTCTCTTCCTTTTATCCCTTTTCTCTTCTTTC
CGCTATCTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_p08.b1 MSMg01no410_p08.b1 CHROMAT_FILE:
MSMg01no410_p08.b1 PHD_FILE: MSMg01no410_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:51 2005
         (393 letters)



>mm_chr10_85806520_85807311
          Length = 792

 Score =  671 bits (347), Expect = 0.0
 Identities = 379/391 (96%), Gaps = 5/391 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctta--gttttccgtgcgttgtcattactacaatgacagcctaaagatcagact 62
           ||||||||||  |||||  ||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 592 gaattccttagggtttt--gtgtgttgtcattactacaacgacagcctaaagatcagact 535

                                                                       
Query: 63  gtcatacaagacaaacctaatggattgactgccaagagctgttgaagaggcaacctattt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtcatacaagacaaacctaatggattgactgccaagagctgttgaagaggcaacctattt 475

                                                                       
Query: 123 ctagctaggttaaagctgagataccatgagatcaggacacaaccagatgcacaatggagc 182
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 474 ctagctacgttaaagctgagataccatgagatcaggacacaaccagatgtacaatggagc 415

                                                                       
Query: 183 caaggctgccaggcaggagtgggtaagcaagccagacccttaacctgaggagccaggtgt 242
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caaggctgccaggcaggagtgcgtaagcaagccagacccttaacctgaggagccaggtgt 355

                                                                       
Query: 243 ctgcaaccctctggatgtcactgactcaagcttcttgcagaccaccccagagcaaaggag 302
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 354 ctgcaaccctctggatgtcactgactcaagcttc-ggcagaccaccccagagcaaaggag 296

                                                                       
Query: 303 tctcagtgctcctgcagacacttacctgtcagcaggtactggtatttgttgacttctagc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tctcagtgctcctgcagacacttacctgtcagcaggtactggtatttgttgacttctagc 236

                                          
Query: 363 ttgaggcctcaaagactttcagaggcttccg 393
           |||||||| ||||||||||||||||||||||
Sbjct: 235 ttgaggccacaaagactttcagaggcttccg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 792
Length adjustment: 9
Effective length of query: 384
Effective length of database: 783
Effective search space:   300672
Effective search space used:   300672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)