BAC Information

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BAC

Clone NameMSMg01-412E02
Chromosome10 (Build37)
Map Location 47,817,522 - 47,817,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412E02.T7 (MSMg01no412_e02.b1)MSMg01-412E02.TJ (MSMg01no412_e02.g1)
ACCAG509071AG509072
length761782
length of high quality
(start - end)
456 (49 - 504)332 (81 - 412)
definitionCHROMAT_FILE: MSMg01no412_e02.b1 PHD_FILE: MSMg01no412_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:33 2005CHROMAT_FILE: MSMg01no412_e02.g1 PHD_FILE: MSMg01no412_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGTTTCCAAGAGAGAATAGAATAGTAAATTGGAACAAGCA
TAAGTATAGATCTTAGTTTGCAAATTGCCAAAAAAAAAATTAGAGGTAAG
TGACCAAGTAAAGGCAAACTTAGTGGATTTTATATTATGCTATCATTTTG
ATATTCAAACATACTAATTTCTAGTATTTTACTGAGGGTGTTGTAGTAGT
TCATTTTGCACAGTATGTGAACATATGTCTTTAAATCTAAGAAAGTTATT
ACTGAGAAACAATCAAATGATTACTAAAGTACAAATCTCATAAACCCATT
TGCATCAAAGAGCTTAGGCTTCTGTACAGCACCTGCTCAGGAGAGTGAAT
AGTAACTTATTTTCTAATTGCTTCTTGAGAAAGGGCTATGGCAATTGGTG
ATGTCACACACATGAACAGACTCATTATTCTGAATAGAAGACTGCGTTTT
ATAAAGGGACAACCAGATTTACAAGAATGAGACTGATCACGGGATGAAGG
GAAAGAAAAAGAGCATTAGAGCCTAAAGGTATTGGTATTAGTACTCATTT
CAAGTTATTACGATCTTCCCAATTTACTCTCTCTCTGTTTCTCGTATAAC
CCTACCACCCCTTTCTTTGCTACAAGTCTATTTCCCCTCCTCACTTTCTA
CCCCTATACTCTCCTTTATCGTTCTCATCCCCTCCTTTAATAATCCCCCT
CCCCCACCCCC
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAGACTTAATTTTTTG
TTTGTTTGTTTGTTTGTCTTTTCTAGTCAGGGTTTCTCTGTGTAGCCCTG
GTTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAAA
CTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCTATTTTTG
TCTTTATTTTTTCCCTGACCAACTTAGTATTCAGTAAAGAGTTGTTCAGT
TTCCAGTACTATGTGGGTTTTCTGTTGTTTTTGTTATTATTGATGTCTAG
CTTTAGTTAATGGTGACCTGATAGTATGCATGGGATTATTTCAATCTTCT
TGTATCTGTTAAACTTGGTCAATTTTGAAGGCATAACAACTCTGTAAAGT
ACTCTGTACGTTCCTCAGAAAACTGGAAATATATCTACCTGCAGACCCCG
CTATATGACTTCTGTCCATACCCTCCCAAGATGCTCCATTTTGTCCCCGG
GTACCTTGCTCTTCCTATGTTTATAACTCCCTTATCTATGATTAGTTTAT
ATCTCGCATCCTTTTCTGATGTTCTCCCCCCCTATTATATTACATATACC
CCCTGTGTTTTTTCCCCCATCTGCTTATACATCTTCAACCCTCTTTCTCA
TCTTCTTCTCCCGTCTCCCTTTTTATTTCCTATCTCTTTTTTTCTCCTCT
CTTCTTTCTAATATTCTTCTCCCCCTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_e02.b1 MSMg01no412_e02.b1 CHROMAT_FILE:
MSMg01no412_e02.b1 PHD_FILE: MSMg01no412_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:33 2005
         (456 letters)



>mm_chr10_47817303_47818158
          Length = 856

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 20  aagagagaatagaatagtaaattggaacaagcataagtatagatcttagtttgcaaattg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aagagagaatagaatagtaaattggaacaagcataagtatagatcttagtttgcaaattg 594

                                                                       
Query: 80  ccaaaaaaaaaattagaggtaagtgaccaagtaaaggcaaacttagtggattttatatta 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ccaaaaaaaaaattagaggtaagtgaccaagtaaaggcaaacttagtggattttatatta 534

                                                                       
Query: 140 tgctatcattttgatattcaaacatactaatttctagtattttactgagggtgttgtagt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgctatcattttgatattcaaacatactaatttctagtattttactgagggtgttgtagt 474

                                                                       
Query: 200 agttcattttgcacagtatgtgaacatatgtctttaaatctaagaaagttattactgaga 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agttcattttgcacagtatgtgaacatatgtctttaaatctaagaaagttattactgaga 414

                                                                       
Query: 260 aacaatcaaatgattactaaagtacaaatctcataaacccatttgcatcaaagagcttag 319
           |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 413 aacaatcaaatgaaaactaaagtacaaatctcatagacccatttgcatcaaagagcttag 354

                                                                       
Query: 320 gcttctgtacagcacctgctcaggagagtgaatagtaacttattttctaattgcttcttg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gcttctgtacagcacctgctcaggagagtgaatagtaacttattttctaattgcttcttg 294

                                                                       
Query: 380 agaaagggctatggcaattggtgatgtcacacacatgaacagactcattattctgaatag 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaaagggctatggcaattggtgatgtcacacacatgaacagactcattattctgaatag 234

                         
Query: 440 aagactgcgtttta 453
           ||||||| ||||||
Sbjct: 233 aagactgtgtttta 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)