MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-412I21
Chromosome	10 (Build37)
Map Location	82,590,900 - 82,591,304
singlet/doublet	singlet
Overlap gene	Chst11
Upstream gene	AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream gene	Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	AU041133 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216177 MGI:2143755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs

name	LOC100042712 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	B230315N10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237411 MGI:3621440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC100042718 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG237412 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237412 MGI:3643133
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein

name	LOC666611 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666611
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins pseudo : _no_value

name	Gm1553 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432480 MGI:2686399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 73 ESTs, 1 Protein

name	LOC544716 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544716
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 167 ESTs, 12 Proteins pseudo : _no_value

name	1190007I07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:544717 MGI:3698433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs

name	Tdg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21665 MGI:108247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Glt8d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74782 MGI:1922032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hcfc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67933 MGI:1915183
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfyb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18045 MGI:97317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700028I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70003 MGI:1917253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Txnrd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50493 MGI:1354175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Eid3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66341 MGI:1913591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG216185 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216185 MGI:3648850
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 41 ESTs, 7 Proteins

name	Chst11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58250 MGI:1927166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc41a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338365 MGI:2442940
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D10Wsu102e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28109 MGI:106381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666748 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666748
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Aldh1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216188 MGI:2444680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A230046K03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319277 MGI:2441787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Appl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216190 MGI:2384914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500009L16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69784 MGI:1917034
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 31 ESTs

name	LOC100041225 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041225
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	C230099D08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320212 MGI:2443595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	AU041133 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388490 GeneID:216177 MGI:2143755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs product : expressed sequence AU041133 transcript_id : XM_125803.5

name	B230315N10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261059 GeneID:237411 MGI:3621440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA B230315N10 gene transcript_id : XM_001479757.1

name	LOC100042718 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261061 GeneID:100042718
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100042718 transcript_id : XM_001479763.1

name	Gm1553 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261063 GeneID:432480 MGI:2686399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 73 ESTs, 1 Protein product : gene model 1553, (NCBI) transcript_id : XM_001479767.1

name	1190007I07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388493 GeneID:544717 MGI:3698433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs product : RIKEN cDNA 1190007I07 gene transcript_id : XM_985039.1

name	Tdg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755753 GeneID:21665 MGI:108247
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymine DNA glycosylase transcript_id : NM_011561.1

name	Tdg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388766 GeneID:21665 MGI:108247
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymine DNA glycosylase transcript_id : NM_172552.2

name	Glt8d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802292 GeneID:74782 MGI:1922032
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycosyltransferase 8 domain containing 2 transcript_id : NM_029102.2

name	Hcfc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487040 GeneID:67933 MGI:1915183
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : host cell factor C2 transcript_id : NM_001081218.1

name	Nfyb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909330 GeneID:18045 MGI:97317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor-Y beta transcript_id : NM_010914.2

name	1700028I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260967 GeneID:70003 MGI:1917253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA 1700028I16 gene transcript_id : XM_001475840.1

name	Txnrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110224446 GeneID:50493 MGI:1354175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin reductase 1 transcript_id : NM_001042523.1

name	Txnrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110224441 GeneID:50493 MGI:1354175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin reductase 1 transcript_id : NM_001042513.1

name	Txnrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110224443 GeneID:50493 MGI:1354175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin reductase 1 transcript_id : NM_015762.2

name	Txnrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110224444 GeneID:50493 MGI:1354175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin reductase 1 transcript_id : NM_001042514.1

name	Eid3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125988413 GeneID:66341 MGI:1913591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EP300 interacting inhibitor of differentiation 3 transcript_id : NM_025499.2

name	EG216185 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260969 GeneID:216185 MGI:3648850
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 41 ESTs, 7 Proteins product : predicted gene, EG216185 transcript_id : XM_122081.6

name	Chst11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76559941 GeneID:58250 MGI:1927166
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate sulfotransferase 11 transcript_id : NM_021439.2

name	Slc41a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349904 GeneID:338365 MGI:2442940
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 41, member 2 transcript_id : NM_177388.3

name	D10Wsu102e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46195802 GeneID:28109 MGI:106381
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 10, Wayne State University 102, expressed transcript_id : NM_026579.2

name	Aldh1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956315 GeneID:216188 MGI:2444680
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldehyde dehydrogenase 1 family, member L2 transcript_id : NM_153543.1

name	A230046K03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126090571 GeneID:319277 MGI:2441787
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A230046K03 gene transcript_id : NM_001033375.2

name	Appl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803546 GeneID:216190 MGI:2384914
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 transcript_id : NM_145220.2

name	1500009L16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388505 GeneID:69784 MGI:1917034
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 31 ESTs product : RIKEN cDNA 1500009L16 gene transcript_id : XM_899407.2

name	C230099D08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260972 GeneID:320212 MGI:2443595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA C230099D08 gene transcript_id : XM_001476017.1

name	AU041133 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027472 GeneID:216177 MGI:2143755
definition	codon_start : 1 product : hypothetical protein protein_id : XP_125803.2

name	B230315N10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261060 GeneID:237411 MGI:3621440
definition	codon_start : 1 product : hypothetical protein LOC237411 protein_id : XP_001479807.1

name	LOC100042718 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261062 GeneID:100042718
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479813.1

name	Gm1553 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261064 GeneID:432480 MGI:2686399
definition	codon_start : 1 product : hypothetical protein LOC432480 protein_id : XP_001479817.1

name	1190007I07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388494 GeneID:544717 MGI:3698433
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990133.1

name	Tdg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777685 CCDS:CCDS24070.1 GeneID:21665 MGI:108247
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : thymine DNA glycosylase isoform 2 protein_id : NP_766140.1

name	Tdg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755754 GeneID:21665 MGI:108247
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : thymine DNA glycosylase isoform 1 protein_id : NP_035691.1

name	Glt8d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037389 CCDS:CCDS24071.1 GeneID:74782 MGI:1922032
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 8 domain containing 2 protein_id : NP_083378.1

name	Hcfc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487041 GeneID:67933 MGI:1915183
definition	codon_start : 1 product : host cell factor 2 protein_id : NP_001074687.1

name	Nfyb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754850 GeneID:18045 MGI:97317
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear transcription factor-Y beta protein_id : NP_035044.1

name	1700028I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260968 GeneID:70003 MGI:1917253
definition	codon_start : 1 product : hypothetical protein LOC70003 protein_id : XP_001475890.1

name	Eid3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125988414 GeneID:66341 MGI:1913591
definition	codon_start : 1 product : E1A-like inhibitor of differentiation 3 protein_id : NP_079775.2

name	Txnrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110224447 GeneID:50493 MGI:1354175
definition	EC_number : 1.8.1.9 GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016654 - oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [Evidence IEA]; GO:0008430 - selenium binding [Evidence IEA]; GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0006125 - thioredoxin pathway [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; TR alpha product : thioredoxin reductase 1 isoform 1 protein_id : NP_001035988.1 transl_except : (pos:82358782..82358784,aa:Sec)

name	Txnrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110224442 GeneID:50493 MGI:1354175
definition	EC_number : 1.8.1.9 GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016654 - oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [Evidence IEA]; GO:0008430 - selenium binding [Evidence IEA]; GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0006125 - thioredoxin pathway [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; TR alpha product : thioredoxin reductase 1 isoform 2 protein_id : NP_001035978.1 transl_except : (pos:82358782..82358784,aa:Sec)

name	Txnrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110224445 GeneID:50493 MGI:1354175
definition	EC_number : 1.8.1.9 GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016654 - oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [Evidence IEA]; GO:0008430 - selenium binding [Evidence IEA]; GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0006125 - thioredoxin pathway [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 4; TR alpha product : thioredoxin reductase 1 isoform 2 protein_id : NP_001035979.1 transl_except : (pos:82358782..82358784,aa:Sec)

name	Txnrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13569841 CCDS:CCDS24072.1 GeneID:50493 MGI:1354175
definition	EC_number : 1.8.1.9 GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016654 - oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [Evidence IEA]; GO:0008430 - selenium binding [Evidence IEA]; GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] GO_process : GO:0008283 - cell proliferation [Evidence IMP]; GO:0006118 - electron transport [Evidence IEA]; GO:0006125 - thioredoxin pathway [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3; TR alpha product : thioredoxin reductase 1 isoform 2 protein_id : NP_056577.2 transl_except : (pos:82358782..82358784,aa:Sec)

name	EG216185 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260970 GeneID:216185 MGI:3648850
definition	codon_start : 1 product : similar to TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : XP_122081.4

name	Chst11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76559942 CCDS:CCDS24074.1 GeneID:58250 MGI:1927166
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0047756 - chondroitin 4-sulfotransferase activity [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030206 - chondroitin sulfate biosynthesis [Evidence IDA] codon_start : 1 note : chondroitin 4-sulfotransferase product : carbohydrate sulfotransferase 11 protein_id : NP_067414.2

name	Slc41a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893565 CCDS:CCDS24075.1 GeneID:338365 MGI:2442940
definition	codon_start : 1 product : solute carrier family 41, member 2 protein_id : NP_796362.1

name	D10Wsu102e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:44662811 CCDS:CCDS24076.1 GeneID:28109 MGI:106381
definition	codon_start : 1 product : hypothetical protein LOC28109 protein_id : NP_080855.1

name	Aldh1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956316 CCDS:CCDS24077.1 GeneID:216188 MGI:2444680
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0048037 - cofactor binding [Evidence IEA]; GO:0016155 - formyltetrahydrofolate dehydrogenase activity [Evidence IEA]; GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0009258 - 10-formyltetrahydrofolate catabolism [Evidence IEA]; GO:0009058 - biosynthesis [Evidence IEA]; GO:0006730 - one-carbon compound metabolism [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : aldehyde dehydrogenase 1 family, member L2 protein_id : NP_705771.1

name	A230046K03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126090572 GeneID:319277 MGI:2441787
definition	codon_start : 1 product : hypothetical protein LOC319277 protein_id : NP_001028547.2

name	Appl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21644587 CCDS:CCDS24078.1 GeneID:216190 MGI:2384914
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0010008 - endosome membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS]; GO:0016581 - NuRD complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0017137 - Rab GTPase binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0007165 - signal transduction [Evidence ISS] codon_start : 1 note : DIP13 beta product : Dip3 beta protein_id : NP_660255.1

name	1500009L16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027529 GeneID:69784 MGI:1917034
definition	codon_start : 1 product : hypothetical protein LOC69784 protein_id : XP_904500.1

name	C230099D08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260973 GeneID:320212 MGI:2443595
definition	codon_start : 1 product : hypothetical protein LOC320212 protein_id : XP_001476067.1

name	LOC666748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666748
definition	number : 1 pseudo : _no_value

name	LOC100041225 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041225
definition	number : 1 pseudo : _no_value

name	LOC100042712 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261058 GeneID:100042712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to brain protein 44 pseudo : _no_value transcript_id : XR_034367.1

name	EG237412 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260963 GeneID:237412 MGI:3643133
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein product : predicted gene, EG237412 transcript_id : XR_035281.1

name	LOC666611 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260964 GeneID:666611
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : similar to mitogen activated protein kinase kinase kinase 7 pseudo : _no_value transcript_id : XR_032433.1

name	LOC544716 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261065 GeneID:544716
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 167 ESTs, 12 Proteins product : similar to clathrin adaptor protein mu3A pseudo : _no_value transcript_id : XR_034379.1

clone name	MSMg01-423J18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-465L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424A09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-190C21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-098A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169L13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-412I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494A18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-460K24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-179O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132C22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-412I21.T7 (MSMg01no412_i21.b1)	MSMg01-412I21.TJ (MSMg01no412_i21.g1)
ACC	AG509300	AG509301
length	767	760
length of high quality (start - end)	402 (45 - 446)	428 (75 - 502)
definition	CHROMAT_FILE: MSMg01no412_i21.b1 PHD_FILE: MSMg01no412_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:57 2005	CHROMAT_FILE: MSMg01no412_i21.g1 PHD_FILE: MSMg01no412_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:57 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANAAATCCGCGGA ATTCAGGCATGGTTACTGACTGGTTAAGCAACACACACCTTAGAACCCGT GGGGAAAAGTAAACAACAACAACAACAACAACAACAAAAACCCAAAAAAA CAAAGCCAGCAAAAGAAGTCAGTGACTGCCATTTTAAAATGCAGCAGAAG CACATTTCTAATTCCACGCTTCCAACAAGAGCGGGGACACCTGTGAATTT ACAGACACTGGGGCTGAGGGACGAAGCGCTCTCTATTGTATCACAATGAG CTTGCCGTGGCTTCAAAGGAGAGTTTTTCCACCCATGACATACAGGATGG AAGTGTGTGACCTGCAGCTCAGGGGCCATACGCAGCCACATGTGCCCCAC GATACCCGAGAATGTGTCCAATATAAAATTGAAAACCTACCTAAAATGTT ATGTGTGCGTTTAATCTTACGTTCTTGGAACTCAGCTATGCTCGTGCATT TTGTACATGATGCCAACGGCGTATCACCGCGTGTGCATCCCTGATGCGCT CATCTGGCCCATAATCATTGTATTTCCCATCCTTTTCGCTTTTAATCCGT TTTTCCTTGTATTCCTCCCTCTACTACGACTTCCCGCTATATTCCGCCCC CTGCCCACGTAAATCGTTCTTCTGTATTGCACTCCGTCCCGTTTATCCCC CTTCTTCCTTATTTTATACACACTTTATCTTCCTTTCTCCCCGCTTTTTC TACCTTGCCCCCACTTG	NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTTAACAGTC TGCTTTACGGGAACCTCTATCACCGCGACCCGCAGTTCTGGTTCTGGAAT GAGGGATCTTCCCTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCG GCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAA CAGACCAGAATCTTCTGTGGCAAAACTTTATTGCTTACATCTTCAGGAGC CAGAGTGTAAGAAGCAAGAGAGATAGAAAACGAAACCCTGTCCCTCTTAA GGAGAATTATCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCC CATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGTACAAGTAGTCACAAA ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCT GTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCATCAGCCTC AGTTGGAAAGGGCAGTGGGTTGGGTTTCGCCCAAAACCGTTCCTTTGAGC ATTCCCCAAAAAAGATCCCTTTTCTATGGGGCCCCGGGTAGCTCCCTGTT TTGTTCTCTTCCTATGGTTGTGGTGAGAGCTCCAATTGTGTCCCCACAAC CTCTGAATCCCTTTGTTGTTCCCGGCCCCCCTCTTGATCATCTCTATTTT TTCGCGTGCG
quality values	Open. Hide. 8 8 8 8 8 8 9 9 25 32 23 23 12 12 12 23 23 18 9 9 10 21 21 39 25 24 28 26 25 27 25 18 9 9 6 7 6 3 0 3 8 6 9 12 23 23 28 24 30 30 28 28 28 28 33 33 33 37 25 25 12 12 11 9 9 9 9 9 15 22 31 24 24 28 37 47 43 48 53 57 57 57 57 57 57 57 50 50 53 59 59 59 50 57 57 57 68 68 68 59 59 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 57 68 57 57 57 57 57 57 57 59 57 57 57 54 57 57 57 57 57 57 54 54 54 54 57 54 54 57 57 59 59 59 57 57 54 54 54 57 54 52 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 54 54 57 57 68 68 68 57 57 52 52 52 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 50 44 43 43 43 57 57 57 57 57 57 68 57 57 57 57 68 68 68 68 57 57 42 42 37 35 35 37 36 41 42 42 59 57 57 54 46 46 43 43 43 42 39 35 35 39 42 57 57 57 57 48 48 48 42 34 41 20 20 32 41 43 54 54 48 48 48 48 48 59 59 59 59 43 43 37 39 39 57 57 57 53 43 43 39 32 34 32 24 18 12 15 12 12 16 11 11 11 11 15 28 32 40 41 41 48 48 43 44 37 39 35 39 37 37 37 37 37 40 32 30 25 12 12 12 12 28 28 37 37 37 37 37 37 35 35 39 59 34 39 28 28 23 32 37 34 34 28 28 18 25 25 39 37 43 43 59 43 42 33 33 32 32 30 42 47 39 43 32 36 28 37 37 37 37 37 29 24 24 28 29 42 30 36 27 20 20 22 22 28 37 33 33 28 28 28 32 30 37 28 23 23 34 28 32 32 37 32 32 34 30 32 24 12 10 14 10 11 11 22 21 11 10 16 15 8 8 8 11 18 28 30 31 34 23 23 19 24 24 24 28 22 28 24 24 19 19 20 28 32 30 29 16 13 11 11 11 23 29 15 15 15 21 21 20 20 18 28 21 28 23 23 23 32 28 31 33 30 24 28 21 24 18 18 11 11 10 10 10 10 10 11 23 22 32 28 23 14 11 16 16 11 11 15 10 15 15 19 15 13 14 21 12 17 15 21 16 12 8 8 8 7 7 6 8 8 8 13 6 8 10 10 10 10 9 9 12 13 14 24 28 33 30 32 28 24 18 20 15 10 10 9 9 10 10 8 8 9 10 10 8 8 8 8 8 9 9 8 8 8 10 10 13 12 12 10 11 13 16 13 11 10 9 9 15 13 10 9 8 8 8 8 6 6 6 8 8 10 10 10 10 16 15 18 20 18 11 8 8 22 10 8 8 10 9 9 9 17 9 9 9 9 8 8 8 6 8 8 9 9 9 8 8 8 8 8 8 8 13 7 7 7 7 8 10 21 12 12 12 13 12 10 8 8 7 7 8 8 9 9 9 12 13 12 11 11 13 8 8 6 6 8 8 8 8 12 10 10 8 8 9 9 12 10 10 10 9 8 8 8 8 8 10 8 8 8 8 8 8 10 11 9 9 10 13 13 16 16 12 21 9 9 9 12 10 10 10 10 9 9 10 10 8 8 6 6 8 8 10 10 12 10 8 10 7 7	Open. Hide. 0 3 8 8 11 11 11 9 8 10 10 8 8 8 15 13 36 36 39 44 44 39 39 39 37 37 39 39 39 25 25 11 9 9 9 11 9 10 11 12 16 19 37 37 37 44 44 47 47 39 39 47 47 53 53 53 53 28 27 10 10 12 12 13 13 16 16 26 21 37 30 30 36 40 46 48 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 46 46 46 48 57 42 42 29 38 38 46 57 68 68 68 68 57 57 68 68 68 68 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 48 57 57 57 57 57 48 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 68 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 50 53 50 48 41 47 32 28 18 19 11 11 11 16 18 15 24 34 39 41 50 48 48 48 48 48 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 68 68 68 68 57 54 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 59 59 59 57 57 57 48 48 54 54 48 48 57 54 54 57 57 57 57 57 57 48 48 48 57 48 59 48 53 50 50 57 57 47 44 43 36 36 43 36 36 37 59 59 57 47 43 40 40 40 40 40 41 39 41 41 34 37 41 44 40 34 31 35 37 37 36 39 36 39 33 36 28 28 13 15 15 33 34 34 34 28 24 24 31 31 28 25 30 30 19 17 11 10 11 20 20 28 23 32 22 22 11 11 11 12 15 21 24 24 19 20 23 23 32 24 28 18 10 8 8 8 8 8 14 16 12 11 12 10 11 11 13 13 19 13 19 15 18 22 14 16 9 8 7 7 7 10 14 12 12 11 10 10 10 10 16 16 17 17 16 12 8 7 7 7 8 6 8 8 9 9 14 14 12 9 9 8 8 6 6 6 6 7 7 8 11 11 8 8 8 8 8 8 8 11 9 9 8 10 8 8 8 8 8 6 6 6 7 9 10 11 9 10 8 8 8 8 10 13 9 9 9 9 8 8 10 10 10 10 11 11 12 8 10 11 8 8 8 8 8 10 11 8 8 8 8 8 8 10 8 8 8 8 8 9 9 13 8 8 8 10 8 8 8 8 8 8 8 9 8 6 6 6 6 6 6 8 8 8 8 8 10 10 10 10 10 11 12 10 8 8 8 8 8 10 10 10 12 11 10 10 8 8 8 8 6 6 8 8 6 7 10 10 13 10 9 9 10 8 8 8 8 11 15 10 10 8 9 9 10 10 10 9 9 10 8 8 8 8 6 6 8 8 8 8 10 10 12 12 8 10 8 8 8 12 8 8 8 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no412_i21.b1 MSMg01no412_i21.b1 CHROMAT_FILE:
MSMg01no412_i21.b1 PHD_FILE: MSMg01no412_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:57 2005
         (402 letters)



>mm_chr10_82590696_82591497
          Length = 802

 Score =  629 bits (325), Expect = 0.0
 Identities = 383/411 (93%), Gaps = 18/411 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggcatggttactgactggttaagcaacacacaccttagaacccgtggggaaa 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaattcaggcatggtgactgactggttaagcaacacacaccttagaacccgtggggaaa 550

                                                                       
Query: 64  agtaaacaacaacaacaacaacaac------aacaaaaacccaaaaaaacaaagccagca 117
           |||||| ||||||||||||||||||      || |||||||||||||| |||||||||||
Sbjct: 549 agtaaaaaacaacaacaacaacaacaaaaaaaaaaaaaacccaaaaaaccaaagccagca 490

                                                                       
Query: 118 aaagaagtcagtgactgccattttaaaatgcagcagaagcacat-ttctaattccacgct 176
           ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 489 aaataagtcagtgactgccattttaaaatgcagcagaagcacatctt-taattccacgct 431

                                                                       
Query: 177 tccaacaagagcggggacacctgtgaatttacagacactggggctgagggacgaagcgct 236
           |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 430 tccaacgagagcggggacacctgtgaatttacagacaccggggctgagggacgaagtgct 371

                                                                       
Query: 237 ctctattgtatcacaatgagcttgccgtggcttcaaaggagagtttttc-----caccca 291
           ||||||||||||||||||||||||||||||||||| |||||||     |     ||||||
Sbjct: 370 ctctattgtatcacaatgagcttgccgtggcttcataggagag-----cacagccaccca 316

                                                                       
Query: 292 tgacatacaggatggaagtgtgtgacctgcagctcaggggccatacgcagccacatgtgc 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgacatacaggatggaagtgtgtgacctgcagctcaggggccatacgcagccacatgtgc 256

                                                              
Query: 352 cccacgatacccgagaatgtgtccaatataaaattgaaaacctacctaaaa 402
           |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 255 cccacgatacccgagaatgtgtccaatataaaatcgaaaacctacctaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information