BAC Information

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BAC

Clone NameMSMg01-412M04
Chromosome10 (Build37)
Map Location 100,921,819 - 101,077,183
singlet/doubletdoublet
Overlap genenone
Upstream geneTmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M04.T7 (MSMg01no412_m04.b1)MSMg01-412M04.TJ (MSMg01no412_m04.g1)
ACCAG509455AG509456
length792783
length of high quality
(start - end)		376 (50 - 425)456 (80 - 535)
definitionCHROMAT_FILE: MSMg01no412_m04.b1 PHD_FILE: MSMg01no412_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:14 2005CHROMAT_FILE: MSMg01no412_m04.g1 PHD_FILE: MSMg01no412_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,921,819 - 100,922,192)(101,076,728 - 101,077,183)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCGC
GGAATTCCCAAAATATGACCATATTATTCTGTATAATAGAATAGATATTG
ATGATAACACTAATTTATAAAAGGATTGGCAAGAAGAACTTGAGGGTACA
GAACTATAATTCCAGAACTTGGGAGGGTAAAGAGCTCAAAGCCAGATGTA
GCTGTATAGTGAACTTGAGTCCCATGTGCAATGGATGCAACCCTGTAGGT
GCAACATTATGATCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT
ATGTATCAAAAGATGGCCTAGTCTGTTATCACTGGAAAGAGAGGCCCATT
GGACAGGCAAACTTTATATGCCCCAGCACAGGGGAATGCCAGGGCCAAAA
AATGGGAAAAGATGGGTAGAGGAGTGGGTGGCGCCTTTCTTTTCCCCCTT
ACCTCTATCCTTCCCCCCCCCCCTTTCTCCTCTCCCCCCCCCCCCTCTTT
CTTTTCTTTTTCTTCCCCCTCCTCCCCTCTCCCTATTCTTCCCCCTTTCT
CCCTTTTCTCCCTTTTATTCCTCCCTCCCCTTTTTCCCCCTTTCCCTTCC
TCTCACCTCCTTATATTTATCCCCCTTCTTCCCTCTCTTTACCCCCCCCC
CCCCCCTTTTTTTTTTATCCCCCTTACCCCTTCCCCCCTCTTTGACCCCC
CTCCCTCTCCTCTTTTCCCCTTTTCTCTTTCTTCTCCCCTCTCCCTCCTT
CCTCCTTCTCTTCCCCTCTTTTGTCTCCCCCTCTCCCTTCCN

NCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCTACAGAGTGGAGTC
AGCAAGGCTGCCCATAACTGAACTTTATCGCAGAACACAGACTTGCATGG
CTGAGAAAGATAGTGCTTCCATGCCACAGAGAAATTGTGTGGTGAGCTTG
GCAGCATTGCCAGGCACTCTCAGTGAGAAAGCCGATGAAGAGCAGAGCAG
CCCGTGCGCCTCCATAGGGAATAGGAAAATAGCTGAGGGACTAAAAATAG
ACAATGCCATGTTTTCTATTAATTGAAAATAAAGTGATGCGTCTCCTTCC
ACTTCCTTTTGATGAATATTAATCACTTTGTGCTATTTTAAACGTAGGAT
TGGTACTAAAATATCTACAGTACCCTGTAATACAAGACTGCCATTCTCAA
CATTTGCATTCCTTAAAACATAAGGAATCACACAATGTTCTTATTACATG
AAGAATTTTGTCACCGTAATTCGGTTAACATATGCATTTATGTAGCCACA
TAGTAAATATTTTGTGCTTATCCTTATTGTGAAATATCCTGACTTGGACT
AAAACCCTTTCTTGCCCACATACTTTTATATGGAAAACCTATTATATTTT
ATGGGCCCCAAAATTTTACAACCGCATCGGCTTATTCCCCACTCGTAATT
AAAATTTCTACGTTCCGAACAAACCCAGACCCAATTCCCCAATCCCTCGC
CTTCCCTCAACTATTTATTTTCCCCCCCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m04.b1 MSMg01no412_m04.b1 CHROMAT_FILE:
MSMg01no412_m04.b1 PHD_FILE: MSMg01no412_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:14 2005
         (376 letters)



>mm_chr10_100921617_100922392
          Length = 776

 Score =  669 bits (346), Expect = 0.0
 Identities = 367/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcccaaaatatgaccatattattctgtataatagaatagatattgatgataacact 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcccaaaataggatcatattattctgtataatagaatagatattgatgataacact 262

                                                                       
Query: 63  aatttataaaaggattggcaagaagaacttgagggtacagaactataattccagaacttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatttataaaaggattggcaagaagaacttgagggtacagaactataattccagaacttg 322

                                                                       
Query: 123 ggagggtaaagagctcaaagccagatgtagctgtatagtgaacttgagtcccatgtgcaa 182
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagggtaaagagttcaaagccagatgtagctgtatagtgaacttgagtcccatgtgcaa 382

                                                                       
Query: 183 tggatgcaaccctgtaggtgcaacattatgatctaaccagtaccccggagctcttgactc 242
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 tggatgcaaccctgtaggtgcaacattatgaactaaccagtaccccggagctcttgactc 442

                                                                       
Query: 243 tagctgcatatgtatcaaaagatggcctagtctgttatcactggaaagagaggcccattg 302
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 443 tagctgcatatgtatcaaaagatggcctagtctgccatcactggaaagagaggcccattg 502

                                                                       
Query: 303 gacaggcaaactttatatgccccagcacaggggaatgccagggccaaaaaatgggaaaag 362
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 gacaggcaaactttatatgccccaacacaggggaatgccagggccaaaaaatgggaaaag 562

                         
Query: 363 atgggtagaggagt 376
           ||||||||||||||
Sbjct: 563 atgggtagaggagt 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_m04.g1 MSMg01no412_m04.g1 CHROMAT_FILE:
MSMg01no412_m04.g1 PHD_FILE: MSMg01no412_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:14 2005
         (456 letters)



>mm_chr10_101076528_101077383
          Length = 856

 Score =  866 bits (448), Expect = 0.0
 Identities = 454/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctcctacagagtggagtcagcaaggctgcccataactgaactttatcgcagaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tttctcctacagagtggagtcagcaaggctgcccataactgaactttatcgcagaacaca 597

                                                                       
Query: 61  gacttgcatggctgagaaagatagtgcttccatgccacagagaaattgtgtggtgagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gacttgcatggctgagaaagatagtgcttccatgccacagagaaattgtgtggtgagctt 537

                                                                       
Query: 121 ggcagcattgccaggcactctcagtgagaaagccgatgaagagcagagcagcccgtgcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 536 ggcagcattgccaggcactctcagtgagaaagccgatgaagagcagagcagccagtgcgc 477

                                                                       
Query: 181 ctccatagggaataggaaaatagctgagggactaaaaatagacaatgccatgttttctat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 476 ctccatagggaataggaaaatagctgagggactaaaaatagacaatgccacgttttctat 417

                                                                       
Query: 241 taattgaaaataaagtgatgcgtctccttccacttccttttgatgaatattaatcacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 taattgaaaataaagtgatgcgtctccttccacttccttttgatgaatattaatcacttt 357

                                                                       
Query: 301 gtgctattttaaacgtaggattggtactaaaatatctacagtaccctgtaatacaagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtgctattttaaacgtaggattggtactaaaatatctacagtaccctgtaatacaagact 297

                                                                       
Query: 361 gccattctcaacatttgcattccttaaaacataaggaatcacacaatgttcttattacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gccattctcaacatttgcattccttaaaacataaggaatcacacaatgttcttattacat 237

                                               
Query: 421 gaagaattttgtcaccgtaattcggttaacatatgc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaagaattttgtcaccgtaattcggttaacatatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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