BAC Information

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BAC

Clone NameMSMg01-414E19
Chromosome10 (Build37)
Map Location 74,467,395 - 74,467,741
singlet/doubletsinglet
Overlap geneGnaz
Upstream genePcdh15, EG630453, EG623346
Downstream geneLOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E19.T7 (MSMg01no414_e19.b1)MSMg01-414E19.TJ (MSMg01no414_e19.g1)
ACCAG510629AG510630
length798789
length of high quality
(start - end)
347 (75 - 421)404 (79 - 482)
definitionCHROMAT_FILE: MSMg01no414_e19.b1 PHD_FILE: MSMg01no414_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:17 2005CHROMAT_FILE: MSMg01no414_e19.g1 PHD_FILE: MSMg01no414_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCCTGACTTTTCACCTGTAGCCACCCTCGCTGCTAACCCCTTCT
GTGCCACTAGGTCAGGGTGGCTTCTGTGGGTTTAGGGCTCTCTGCCTGCA
GGAGGAGGCTGCGTCTGGGCCGGGCAGCTTTATAAACAGGATGTACAGGA
CACCCAGCAAGAGGAGCATAGACACAGAGCTGGGCCTTGAGCATCTGTAC
ACAGAGCCCAGGGGATTGACCAGACTGCTGATGTACAGATGCAAACCCAA
GACTTCCCGTGCCAAGATGTGGGATCTTATAGTTCCCGATTGTTTTAAAC
CTGAATACCTTACCCAGCTCCTTTGTGGTCTCTGACCAGACCAACCCTCT
GGGCATCAGACACAAGATGCACACCACCCAGATGTCACTGGGAAGTGAGG
CTGCTACAGAAGGGAAGTCCCGCCCCATTTGTTCAGAGTCTCATTTGCGT
ACCTGACACCTCCCACACCACAATCTAGATACCCTCACGTAAGTGTTTGG
AGCCCTCCCAACATAATCCTATGGCTCCCTTCTTCATTCAGTCTCCTAGT
GCGCCTTGCTCAATCCTCTCTAAACCTTTTTCTATCCTAATTTATCTTTT
ATCCTATATTGCCTTAGTTTTTTTTTTTTTTTTTTTTTCATTAACCTTAC
CTTCATCCCCCTCTTATATTAATATTACATCTTCATACTCCTTATACCTA
CTTACATTATCTTCTCACCCATCATAACTTTTAACTTTTAATATCACG
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCCATTCCTCTCAATTTA
CACACCACCCAGGCGAGATATATGCAGAGAAACATCTGAATTAAATGATA
AGTAGATGGAACAGACTTAAGAGACATCTATAGAACATTCCATTCAGAAC
ACTGCAGACACACACACATTCTTCTGGATAGCTCAAGAAACCATCTCTAT
AACAGATGACCTACCAGGTCACAAAGCAGGTCTTCATAAGTCTAAATAAA
CTCATGGTGTTCTATTTGACTACTAGTGTTTTTTACAAAGCACAAGAGCA
AGAGAAACTACAGAACATACACAAACTCATGGAAATGAAACAATGCAGTA
TTGGATGATGAATGGGTCATTGCAGAAATCAAGAAGGTTGTTTTTGTTCT
TTTGTTTGTGTTTTTTGTTATTTTTTTTTAAACTCAACATACCTAACCCT
ATTGGATACAATGAACAACATTCCTAACAAATTTCAGAGCTATATTTTCC
TACATCCTGAGTGAGGTTACACCTTCCCACAGGAACTTTCTCCATAGGCA
CTCCTGGATAAGGGGACATAATCCCTAACACCTGGATCCCCACCAACTAC
AGACCACGTTTCCTTTCTCTTTTTTTTTCTTTTACCATCTGACCCTCCTC
TCTTTACCTAATGCTCCTCCCCTCTCTGGCGACTAAATCCCCTCTTCGTC
AGCCGATTCTCGACGCTTTACCTTGTGTTCCCCTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e19.b1 MSMg01no414_e19.b1 CHROMAT_FILE:
MSMg01no414_e19.b1 PHD_FILE: MSMg01no414_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:17 2005
         (347 letters)



>mm_chr10_74467195_74467941
          Length = 747

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccaccctcgctgctaaccccttctgtgccactaggtcagggtggcttctgtgggttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccaccctcgctgctaaccccttctgtgccactaggtcagggtggcttctgtgggttta 260

                                                                       
Query: 61  gggctctctgcctgcaggaggaggctgcgtctgggccgggcagctttataaacaggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctctctgcctgcaggaggaggctgcgtctgggccgggcagctttataaacaggatgt 320

                                                                       
Query: 121 acaggacacccagcaagaggagcatagacacagagctgggccttgagcatctgtacacag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 acgggacacccagcaagaggagcatagacacagagctgggccttgagcatctgtatacag 380

                                                                       
Query: 181 agcccaggggattgaccagactgctgatgtacagatgcaaacccaagacttcccgtgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcccaggggattgaccagactgctgatgtacagatgcaaacccaagacttcccgtgcca 440

                                                                       
Query: 241 agatgtgggatcttatagttcccgattgttttaaacctgaataccttacccagctccttt 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgtgggatcagatagttcccgattgttttaaacctgaataccttacccagctccttt 500

                                                          
Query: 301 gtggtctctgaccagaccaaccctctgggcatcagacacaagatgca 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggtctctgaccagaccaaccctctgggcatcagacacaagatgca 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)