BAC Information

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BAC

Clone NameMSMg01-414P06
Chromosome10 (Build37)
Map Location 36,262,573 - 36,262,999
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC100041585, LOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414P06.T7 (MSMg01no414_p06.b1)MSMg01-414P06.TJ (MSMg01no414_p06.g1)
ACCAG511126AG511127
length786770
length of high quality
(start - end)
491 (43 - 533)467 (75 - 541)
definitionCHROMAT_FILE: MSMg01no414_p06.b1 PHD_FILE: MSMg01no414_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:10 2005CHROMAT_FILE: MSMg01no414_p06.g1 PHD_FILE: MSMg01no414_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGTATTGATGCCGTTGATCCATTTGGTGTTGAATGCTATGCAGGGTT
AAAGATAAGGATTTAGTTTCATTCTTCTGTATTGACACCCAGATTTATCA
GGACCATTTGATGAAGATGTTGTCTTGTTTTCCAATGTATACTTTGGGCA
TCTTTGTCCAAAATAAGGTAGTTGCAGTTACTTGATTCTATTTCATTGAT
CAGCATATATATTTATCCTTCTACTAAGCTGTTTCCATTATGATGTTATA
TAATAGCTTGAAATCAAGTACAGAGACAGCACTTTCTTCTATTATGATGT
AGAACAGCCTGAAATCAGGTACTCTTCAGTATTCATTTTTGTTAGGGATT
GTTTCTAATATCCTTCATTTTTGTGCTCCCATATAAGTTTTAGGATTGAT
TTTTCTGTCTGTGAATTTTGACTGCTGCTGCTATGAATCTATAGATTACT
TCTAGNAAATTGATTATTTCTACAAAATTTAATTCTNTCAAACAATGAGC
CTGGGTGGTTATTTGGTTTAGCATTTCTTCAGTTTCTGTTTTCAGTGTCT
AAAGGGCCTTCATTTTTTAAGTAAACTTATTGTCCCTGTGCGTGTGTGTG
TGTGGTGACTTCTTCTTCTTTTTTTCATTCTCTTTTTCTATACCTATTAT
TTTTTTCCCCCTTCCACTTTACTCATTTTTCGTACTCTCTTTTTTACTTA
CCTTATTTTTCCTATTTATTTTTTTTCTTCCTTCGN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAGAAAGTATTTTCTTCATAACCG
AAGCTTGTAAGATACTTACAATACAAAGAGAATTGCCCGGGGCATGGATT
TAAGTATTTAATAAGTGAAATTTTTCCTATAGAACTGACTTGTCAATCAG
ACATATATATGTATTTCTTAAGTATTATCCAGTGTAATGAATTAAATAGT
AACCAACTGGGTTGAAATGTCATAAATCCTTTTGTGTTAAGCATCACCAT
GTTTTGTTTTTGCTTTTTATTTTTGTTTTTTTGTTTTTGTTTTTTTTGTT
TTTGTTTTTGTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG
TCCTGGAACTCACTCTATAGACCAGGCTAGCCTCGAACTCAGAAATCTAC
CTGCCTCTGCCTCCCAAGTACTGGTATTAAAAGCATGTGCCACCACATCA
TTTTTAAATATGAAGCAAAAAAGATTGAAAAAATATAGTACTACATTTGT
CTTTGCACCAAAATTATTGAACATTTTAAGCAGAAAATTAAGTTTACGTT
AAAAATGTCTGGCAGAGCTCCTCTTCCCATATTTTTTTCTTAACTATAAA
GTTGACCTAAGAAAAGAGTTCTAGACTTATTTTAGTTTTCCCACCGCTTT
CTTTAGGTCTGAGGTCAAGGGGTTTATAACCATCTTCTCACACGGTAGCT
CTCCCGGTCCTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_p06.g1 MSMg01no414_p06.g1 CHROMAT_FILE:
MSMg01no414_p06.g1 PHD_FILE: MSMg01no414_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:10 2005
         (467 letters)



>mm_chr10_36262573_36263439
          Length = 867

 Score =  770 bits (398), Expect = 0.0
 Identities = 418/428 (97%), Gaps = 8/428 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagaaagtattttcttcataaccgaagcttgtaagatacttacaatacaaagagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctagaaagtattttcttcataaccgaagcttgtaagatacttacaatacaaagagaatt 368

                                                                       
Query: 61  gcccggggcatggatttaagtatttaataagtgaaatttttcctatagaactgacttgtc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcctggggcatggatttaagtatttaataagtgaaatttttcctatagaactgacttgtc 308

                                                                       
Query: 121 aatcagacatatatatgtatttcttaagtattatccagtgtaatgaattaaatagtaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatcagacatatatatgtatttcttaagtattatccagtgtaatgaattaaatagtaacc 248

                                                                       
Query: 181 aactgggttgaaatgtcataaatccttttgtgttaagcatcaccatgttttgtttttgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 247 aactgggttgaaatgtcataaatccttttgtgttaagcatcaccatgttttgttttcgct 188

                                                                       
Query: 241 ttttatttttgtttttttgtttttgttttttttgttttt----gtttttgttttttttt- 295
           |||||||||||||||||||||||| ||||||||||||||    |||||||||||||||| 
Sbjct: 187 ttttatttttgtttttttgttttt-ttttttttgtttttttttgtttttgtttttttttt 129

                                                                       
Query: 296 --gagacagggtttctctgtgtagccctggctgtcctggaactcactctatagaccaggc 353
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttgagacagggtttctctgtgtagccctggctgtcctggaactcactctatagaccaggc 69

                                                                       
Query: 354 tagcctcgaactcagaaatctacctgcctctgcctcccaagtactggtattaaaagcatg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tagcctcgaactcagaaatctacctgcctctgcctcccaagtactggtattaaaagcatg 9

                   
Query: 414 tgccacca 421
           ||||||||
Sbjct: 8   tgccacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)