Query= MSMg01no415_e21.b1 MSMg01no415_e21.b1 CHROMAT_FILE:
MSMg01no415_e21.b1 PHD_FILE: MSMg01no415_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:39 2005
(484 letters)
>mm_chr10_25135240_25136123
Length = 884
Score = 876 bits (453), Expect = 0.0
Identities = 474/481 (98%)
Strand = Plus / Plus
Query: 4 ggaattccttttttcacgtctagtgctagaaatgggaaggggaaggatcatagctgtgtc 63
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattccttttttcaggtctagtgctagaaatgggaaggggaaggaccatagctgtgtc 263
Query: 64 tctcctgtccccgtgaagacttgtagctgtcagcggtgctgctctcagaaggtttcggac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcctgtccccgtgaagacttgtagctgtcagcggtgctgctctcagaaggtttcggac 323
Query: 124 tagagcagtcaggaaggatctctacagttcctcgtgctgtgctgactcccaaccacagca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagagcagtcaggaaggatctctacagttcctcgtgctgtgctgactcccaaccacagca 383
Query: 184 ttatttttgttgctacttcataactgtaattttgctgcagttacaaatcttgatgtaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatttttgttgctacttcataactgtaattttgctgcagttacaaatcttgatgtaaat 443
Query: 244 atttgatatgagacccctgtgaaagggttgctcaactcccaaaacgggtcacagcccaca 303
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 atttgatgtgggacccctgtgaaagggttgctcaactcccaaaatgggtcacagcccaca 503
Query: 304 ggttgagaaccactggactagcgcattcctttgtagcagagctgagtttatctaataact 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttgagaaccactggactagcacattcctttgtagcagagctgagtttatctaataact 563
Query: 364 atgaaggcaaatggtaaactgaactgtattgttcttagaaacagtttttttgtcatttgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgaaggcaaatggtaaactgaactgtattgttcttagaaacagtttttttgtcatttgc 623
Query: 424 ttcagtccagtttttggactaccatctctataatgtaatcagacagttttgccttgaagt 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 ttcagtccagtttttggactaccatctccataatgtaatcagacagttttgccttgaagt 683
Query: 484 a 484
|
Sbjct: 684 a 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_e21.g1 MSMg01no415_e21.g1 CHROMAT_FILE:
MSMg01no415_e21.g1 PHD_FILE: MSMg01no415_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:39 2005
(472 letters)
>mm_chr10_25299856_25300727
Length = 872
Score = 799 bits (413), Expect = 0.0
Identities = 467/505 (92%), Gaps = 33/505 (6%)
Strand = Plus / Minus
Query: 1 ctgtacccttcagtactcctggaattagacagcaagtagtgccagactggaaacctattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctgtacccttcagtactcctggaattagacagcaagtagtgccagactggaaacctattt 802
Query: 61 ccctcaagtaaaagattttgtttaaatttgtttttccttttatctcttcagatacatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccctcaagtaaaagattttgtttaaatttgtttttccttttatctcttcagatacatgca 742
Query: 121 tatgta----------------------------tacgt--acgtgaat---gtgaatat 147
|||||| ||||| |||||||| ||||||||
Sbjct: 741 tatgtatatgtacgtgtatgtgtacgtgtacatgtacgtgaacgtgaatgtggtgaatat 682
Query: 148 gaatatataagatcgtattctgtttgggcttgtcacttggactacacttaaactcctaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gaatatataagatcgtattctgtttgggcttgtcacttggactacacttaagctcctaag 622
Query: 208 tatgaatcccagatacagtccccaaacatctttctaattagctcttatacttaagtctgg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgaatcccagatacagtccccaaacatctttctaattagctcttatacttaagtctgg 562
Query: 268 gtttaagaacctttcttacactcctacttcagggttttttgaagtttcaaggacatttgg 327
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttaataacccttcttacactcctacttcagggttttttgaagtttcaaggacatttgg 502
Query: 328 aataacaagtaaatccaaagatgagccacttgctcaggatattcctctgagttgttctct 387
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 501 aataacaagtaaatccaaagatgagccacttgctcaggatattcctctgacttgtcctct 442
Query: 388 actctgctgttgaaataattaatccacaattgaacaagagcatctgaggctgtgtaaaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctgctgttgaaataattaatccacaattgaacaagagcatctgaggctgtgtaaaga 382
Query: 448 gctgtccttaaactaattccagtga 472
|||||||||||||||||||||||||
Sbjct: 381 gctgtccttaaactaattccagtga 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
