BAC Information

Click to search

BAC

Clone NameMSMg01-415J22
Chromosome10 (Build37)
Map Location 50,765,914 - 50,766,411
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415J22.T7 (MSMg01no415_j22.b1)MSMg01-415J22.TJ (MSMg01no415_j22.g1)
ACCAG511635AG511636
length860735
length of high quality
(start - end)
40 (112 - 151)510 (68 - 577)
definitionCHROMAT_FILE: MSMg01no415_j22.b1 PHD_FILE: MSMg01no415_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:03 2005CHROMAT_FILE: MSMg01no415_j22.g1 PHD_FILE: MSMg01no415_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGGATCCGCGGAATTC
ATGGCTTTTTTCATTGCAACTAGGTGGTGATTGGAATNNTTATGTATAGA
GTGGAAATGGGTAGTATTAGAGAATAAAAGCTAATTTGGAAAAAAATCAA
CATTTTGAAAGAAATAAACTTGACCATTTTTCACAGTGGNTAGGCATTTT
TTAAAAACTATATGTAGTTTTAAAGAAAAACNNGNAAAACCTAATATATT
TAATGTTTTTTTTNNNNNNNNCATNNTTGGNGCTACTTTTTGNATTNTTC
GTNNNNNNGGAGNCTGGGGGGCTAGTGGNTTGTTCTTTCTCCCGATNNTN
AGNTTAAAANNNNNNNNNNNNNNNNNNNACNNNNNNNNNNNNNNNNNNNN
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAGCTCCTCCTGCACCATACCTTCCTGGATCC
TGCCATGCTCTTGCCTTGACGATAATGGACTGCACCTCTGAACTTGTAAG
CCAGCTCCAATTAATTGTCCTTATAAGAGTTACCTTGGTCATGGTATCTG
TTCAAAGCAGTAAAACCCTAAGACAATGTGTAAACTTTGAAGAGAGTCCG
TGTTTCAGGAAATGCCACAGTGCATTTCTTCTTTGTACCACTCAGAGGAG
CCCAGGAATGGTATGCTTCGACTGCTGACTCATGGGAATGGGAAGATTTA
TCTCAGCTTTAAATTTGTTTTTTCATCAAAGAAAAACTCATATAATTGCT
AGTAAATGACACAAGGGAGAGTGGAAGAAACAGACATTCTACATGGACTT
TAGATTGATGAAGAGAAAACCATGGCTTACATTTTCACTCAATAAGTGTG
CACCAACTGTATCCTAAATCCATCTGTGTGTACCGAGACGTCTATCTGTT
TTGCTCCTCCTGGTGTGAGCAGCATAGAAATCACAAAGTTGCTTATGACT
TTTGCCACAACAAAGGCATTTCCTGGCCATGTAAGACTTCTTTGCTATTT
TTTTTCTAGGAAAAACATGGTAGTATACCTCCAGAGTAAAACTTCTTATG
ACAGTACTGTCCTTTAAACAAACACAAAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_j22.g1 MSMg01no415_j22.g1 CHROMAT_FILE:
MSMg01no415_j22.g1 PHD_FILE: MSMg01no415_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:03 2005
         (510 letters)



>mm_chr10_50765702_50766611
          Length = 910

 Score =  909 bits (470), Expect = 0.0
 Identities = 495/510 (97%), Gaps = 12/510 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagctcctcctgcaccataccttcctggatcctgccatgctcttgccttgacgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttagctcctcctgcaccataccttcctggatcctgccatgctcttgccttgacgataatg 272

                                                                       
Query: 61  gactgcacctctgaacttgtaagccagctccaattaattgtccttataagagttaccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gactgcacctctgaacttgtaagccagctccaattaattgtccttataagagttaccttg 332

                                                                       
Query: 121 gtcatggtatctgttcaaagcagtaaaaccctaagacaatgtgtaaactttgaagagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtcatggtatctgttcaaagcagtaaaaccctaagacaatgtgtaaactttgaagagagt 392

                                                                       
Query: 181 ccgtgtttcaggaaatgccacagtgcatttcttctttgtaccactcagaggagcccagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccgtgtttcaggaaatgccacagtgcatttcttctttgtaccactcagaggagcccagga 452

                                                                       
Query: 241 atggtatgcttcgactgctgactcatgggaatgggaagatttatctcagctttaaatttg 300
           |||| |||||||   |         |||||||||||||||||||||||||||||||||||
Sbjct: 453 atggcatgcttc---t---------tgggaatgggaagatttatctcagctttaaatttg 500

                                                                       
Query: 301 ttttttcatcaaagaaaaactcatataattgctagtaaatgacacaagggagagtggaag 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttcatcaaagaaaaactcacataattgctagtaaatgacacaagggagagtggaag 560

                                                                       
Query: 361 aaacagacattctacatggactttagattgatgaagagaaaaccatggcttacattttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacagacattctacatggactttagattgatgaagagaaaaccatggcttacattttca 620

                                                                       
Query: 421 ctcaataagtgtgcaccaactgtatcctaaatccatctgtgtgtaccgagacgtctatct 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ctcaataagtgtgcaccaactgtatcctaaattcatctgtgtgtaccgagacgtctatct 680

                                         
Query: 481 gttttgctcctcctggtgtgagcagcatag 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 gttttgctcctcctggtgtgagcagcatag 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)