BAC Information

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BAC

Clone NameMSMg01-416B11
Chromosome10 (Build37)
Map Location 120,399,803 - 120,400,295
singlet/doubletsinglet
Overlap geneLemd3
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488
Downstream geneWif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416B11.T7 (MSMg01no416_b11.b1)MSMg01-416B11.TJ (MSMg01no416_b11.g1)
ACCAG511992AG511993
length712737
length of high quality
(start - end)
584 (46 - 629)502 (76 - 577)
definitionCHROMAT_FILE: MSMg01no416_b11.b1 PHD_FILE: MSMg01no416_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005CHROMAT_FILE: MSMg01no416_b11.g1 PHD_FILE: MSMg01no416_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATATTCAGAGAATCCGCGGAATTCAGATATTATCCCCATGTTCT
TGATATGTTACTTGGTCTTTTCCCTTGCAATCTTTAATATGTTTTCTTTA
TTCTGTGTTTAGCATTTTAATTATTATGTGCTGAGAGGACTTTCTTTTCT
GGTCTAGTCTGTTTGGTATATATACTTCTTGTACCTGGATAGGCATGTCC
ATCTTTAGAGTAGGGAAATTTTCTTCTATGGTTTTGTTGATAATGTTTTC
TGTGCTTTTGACTTGGATTTCTTCTCCTTCCTCCGTTCCTATTATCCTTG
TATTTTTTTTTTTAAATTAGATCCAAGAGTTTTCTAGTAGACTTTGTAGG
GTCTCTTAAGTAAAGAATTACATAATCTGCAAATAGAGTTAGTTTGACAT
CTTCCCTTTCTGTTCTTACCCCTTTTTTGTCTCTCTCTTGTCTAATTGCT
GCAGCTAAGACTTCCAGCTCTAAACTGAAGAAGAGAGGGTAGGGTGGACA
TCCTTGTGTGGTCCTCCATTTTAGAGGAAGTGCTTGTAGTGTGACTTCAC
TTAATAAAAATGTTGGCTACAGATTTATTGTATGTAGCCTTTATTTCCAG
AGATATTGCATCCATTCCCAAAGTCTGAAGCGTGCTCTCTCTCTCTGTCT
TTTTTTTTTTATCATGAAAGCACATTATACATTGTTAAATGATATTCAAG
CATCAACTGAAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTCCAGATTGA
GTTCCAGGACAGCCAGTGAGTGTTGGATGCAGAGATTCTTGGCTGTTCAA
AACAGTGCATGTTGAGCTTTAACCAGATCACTTTTACTATCCCCTAGAAG
GCTTAGGGAATATCATGGGAAATCGGATAGAAAGACTAAGAGGAGAGAGA
GAAGGCTGCAGAGTGCTCTCTTCTGTGCATGCGAGAGGAGGTCATAGCAG
TCATGAATCCCAGCAGCCCGTTGCTTTCTTTGGACATACCCAAGAGCGGG
CCTGGAAAGAGTCACAGATGGTGGAAGATCAGGGCCCACTCTTCCCTGCT
GAATGCTTCTGGAGAAGGGGAGTCCTCATCTTCAGATGTGTGCACAGGTG
AGCCCACCCGGATGCTCACAGAGACCACCTGGTTAAACTTGGTGGGTCAC
AAAACACAAAACAAAGGCTGGAAGGGAGCCAGTGGGGAGGATTGACAGGA
GTGGGCAGGTGAGGAGAGGGTGGAGCCTAAAGTGATCAGTGTGTTGTGTG
GATGAAGTTGTTGAAGACATATTAGTTATCCAAAGTGAGGTACACTATCC
CCAGCAGTTCTAATATTCATTTCTCCTGTTCCCGGGATAAGAAACCGAAC
CTTTTCCAAATTTAAAAATTTTGTTGTGTATTGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_b11.g1 MSMg01no416_b11.g1 CHROMAT_FILE:
MSMg01no416_b11.g1 PHD_FILE: MSMg01no416_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:38 2005
         (502 letters)



>mm_chr10_120399624_120400523
          Length = 900

 Score =  866 bits (448), Expect = 0.0
 Identities = 485/502 (96%), Gaps = 9/502 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagcctggtctccagattgagttccaggacagccagtgagtgttggatgcagaga 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 672 aaggccagcctggtctccagattgagctccaggacagccagtaagtgttggatgcagaga 613

                                                                       
Query: 61  ttcttggctgttcaaaacagtgcatgttgagctttaaccagatcacttttactatcccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttcttggctgttcaaaacagtgcatgttgagctttaaccagatcacttttactatcccct 553

                                                                       
Query: 121 agaaggcttagggaatatcatgggaaatcggatagaaagactaagaggagagagagaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agaaggcttagggaatatcatgggaaatcggatagaaagactaagaggagagagagaagg 493

                                                                       
Query: 181 ctgcagagtgctctcttctgtgcatgcgagaggaggtcatagcagtcatgaatcccagca 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 492 ctgcagagtgctctcttctgtgcatgcgggaggaggtcatagcagtcatgaatcccagca 433

                                                                       
Query: 241 gcccgttgctttctttggacatacccaagagcgggcctggaaagagtcacagatggtgga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcccgttgctttcattggacatacccaagagcgggcctggaaagagtcacagatggtgga 373

                                                                       
Query: 301 agatcagggcccactcttccctgctgaatgcttctggagaaggggagtcctcatcttcag 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 372 agatcagggcccactcttccctgctgaatgcttctggagaagggaagtcctcatcttcag 313

                                                                       
Query: 361 atgtgtgcacaggtgagcccacccggatgctcacagagaccacctggttaaacttggtgg 420
           ||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||
Sbjct: 312 atgcgtgcacaggtgagcccacccggatgctca--gagaccacctggttaagcttggtgg 255

                                                                       
Query: 421 gtcacaaaacacaaaacaaaggctggaagggagccagtggggaggattgacaggagtggg 480
           |||||||||||       ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 254 gtcacaaaaca-------aaggctggaagggagccggtggggaggattgacaggagtggg 202

                                 
Query: 481 caggtgaggagagggtggagcc 502
           ||||||||||||||||||||||
Sbjct: 201 caggtgaggagagggtggagcc 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space:   437880
Effective search space used:   437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)