BAC Information

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BAC

Clone NameMSMg01-416C24
Chromosome10 (Build37)
Map Location 51,695,994 - 51,897,141
singlet/doubletdoublet
Overlap geneVgll2, Ros1
Upstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C24.T7 (MSMg01no416_c24.b1)MSMg01-416C24.TJ (MSMg01no416_c24.g1)
ACCAG512065AG512066
length748747
length of high quality
(start - end)
224 (295 - 518)260 (269 - 528)
definitionCHROMAT_FILE: MSMg01no416_c24.b1 PHD_FILE: MSMg01no416_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:45 2005CHROMAT_FILE: MSMg01no416_c24.g1 PHD_FILE: MSMg01no416_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,695,994 - 51,696,217)(51,896,882 - 51,897,141)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGT
CGTCCTGCTTTCTTCACTCCCTTGAAGTCTTTAAGGCCCCGAGATCACAC
TCTAGGAATTTCCTGAATCCAAGGTTCTGCCAAGGAGTCTTCCAGTAACT
AAATAAGCAGATATTAGAACTGAGTTCCTAAATGATTGAACACCAAAAAT
GACTCCATTATTATCTTGGGCTAGGTAATTCGTTTCAGTTTTGATAAAGC
TTGAAGATAAGAGCTTGACTAATAGCTATTGGTTACAAATGTTCACAAAA
GCTGAATCAATGACTGTTTCGATCCTAGAAGTGGCAATCCATGCAGTATA
CCCGTATGACCTACTACATGTACATTCTCTGATTACTCTTTCTCCATAAT
AGCTATTCTGGTTTTATGCTCTTGGCTGCTCACAGGTTATTAATGATAGG
ACAGATTCTGTGCAAACACTGAGGAACCACAGATGCCAGCCCAAACTACT
ATAATCAGCAAAACTATCAATTATACTCAGGAGAGAAAGAAAAATATTTC
ACAATAAAAACAGTTTATGAAATCTCAGCTCAACAATCCAGTACTGTAGA
CAGAAAGGACTATGAGAAAAATGTCCGGCTGAAGAGGTGGACCCACCCCC
CAAAAACCAGGAAAAAAAATCCCCTAACCATTTTGCCAAAGGGCCTGGAG
AACCAACCCCCCCCCCCCCATTATTATCCAATATTAACACAACTTCTN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCTTGTATTAGCCAAAATCC
ATTGCCAACACCTTGAATCACGTTTTCCTCTGCTGACCTGCAAAGAAATG
CTATTACTTTTCAGTTTTAAACCTGGTTATGGCATGGTAAGATGGCTCAA
AGAGGAAAGGAACTTGCTGCCAAATCTCATGGCTTGAGTTTGATACCAGG
AAGCCACATGGTGAAAGGAGAGAACTGACTCTTGTAAATTGTCCTCTGAT
CTTTATACTTAGCCCATGACATGAGCTTTCACCACAGTGAGTAAATAAAC
AGACAAGTAAATAAAATAATAAAAGCATTGTGCTCTGCTTAGATGCCTGG
AACCAGAGCTGAAACTATGCTACCTTGCCTGCAGCAGGATGTGTGTGATT
ACCCCTAAATAAACATTAAGGCATAAATAATCCTTTCTAACAGGAAGTAA
AGCTATACACTGGGGCTTTAAATACTCAGTAGACAGTGTCTATGCAGTAT
CACAGTGACTTTCCCTGCCAGTGGGTAAAGATGGGATTTTATTGACATGA
CACAGAGTGAGAATTTGCCCCCCAGTGAACACATGAAGACCTCCCCGGAG
AGAAGGAAAACCTTATTTTCCCCAAACCTGTTAATGAAAAAAGAAAATTC
TCGGTAATGAGAATCTTTAAAAAAATAGCCCCCCTGGTAACACTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c24.b1 MSMg01no416_c24.b1 CHROMAT_FILE:
MSMg01no416_c24.b1 PHD_FILE: MSMg01no416_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:45 2005
         (224 letters)



>mm_chr10_51695794_51696417
          Length = 624

 Score =  418 bits (216), Expect = e-121
 Identities = 222/224 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaagctgaatcaatgactgtttcgatcctagaagtggcaatccatgcagtatacccg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaggctgaatcaatgactgtttcgatcctagaagtggcaatccatgcagtatacccg 260

                                                                       
Query: 61  tatgacctactacatgtacattctctgattactctttctccataatagctattctggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgacctactacatgtacattctctgattactctttctccataatagctattctggttt 320

                                                                       
Query: 121 tatgctcttggctgctcacaggttattaatgataggacagattctgtgcaaacactgagg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tatgctcttggctgctcacaggttattaatgaaaggacagattctgtgcaaacactgagg 380

                                                       
Query: 181 aaccacagatgccagcccaaactactataatcagcaaaactatc 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccacagatgccagcccaaactactataatcagcaaaactatc 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no416_c24.g1 MSMg01no416_c24.g1 CHROMAT_FILE:
MSMg01no416_c24.g1 PHD_FILE: MSMg01no416_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:45 2005
         (260 letters)



>mm_chr10_51896613_51897272
          Length = 660

 Score =  456 bits (236), Expect = e-133
 Identities = 254/260 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaactgactcttgtaaattgtcctctgatctttatacttagcccatgacatgagctt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agagaattgactcttgtaaattgtcctctgatctttatacttagcccatgacatgagctt 470

                                                                       
Query: 61  tcaccacagtgagtaaataaacagacaagtaaataaaataataaaagcattgtgctctgc 120
            ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 469 ccaccacaatgagtaaataaacaaacaagtaaataaaataataaaagcattgtgttctgc 410

                                                                       
Query: 121 ttagatgcctggaaccagagctgaaactatgctaccttgcctgcagcaggatgtgtgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttagatgcctggaaccagagctgaaactatgctaccttgcctgcagcaggatgtgtgtga 350

                                                                       
Query: 181 ttacccctaaataaacattaaggcataaataatcctttctaacaggaagtaaagctatac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 349 ttacccctaaataaacattaaggcataaataatcctttctaacaggaagtaaagttatac 290

                               
Query: 241 actggggctttaaatactca 260
           ||||||||||||||||||||
Sbjct: 289 actggggctttaaatactca 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)