Query= MSMg01no416_d24.b1 MSMg01no416_d24.b1 CHROMAT_FILE:
MSMg01no416_d24.b1 PHD_FILE: MSMg01no416_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:50 2005
(549 letters)
>mm_chr10_94086456_94087404
Length = 949
Score = 1002 bits (518), Expect = 0.0
Identities = 536/542 (98%)
Strand = Plus / Minus
Query: 8 aattctcattaatatttctctctcaccaagagcctacaggccactgctaaattcaaattg 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aattctcattaataattctctctcaccaagagcctacaggccactgctaaattcaaattg 690
Query: 68 gtccaaatgttgcctgcagatggttgagttacgcattattggggttaattcccaagcaag 127
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 689 gtccaaatgttgcctgcagatggttgagttacgcattattgaggttaattcccaagcaag 630
Query: 128 aaatcggcgtgctgtgtgttctaactatggccgtgtgctcctgcctcagtcaggttctgt 187
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaatcggcgtgctatgtgttctaactatggccgtgtgctcctgcctcagtcaggttctgt 570
Query: 188 acctcggcagatctgagggcacacatagcttagttagtgccattgaattcatttgcaaat 247
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 accttggcagatctgagggcacacatagcttagttagtgccattgaattcatttgcaaat 510
Query: 248 aaataaaaataaatctcttgcttacttttgctgcattctagctgcagagactaaagacca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaataaaaataaatctcttgcttacttttgctgcattctagctgcagagactaaagacca 450
Query: 308 gaaaactcctgaattattatttgatgtgtcgctatttttaacctactgctctgtgacaaa 367
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 449 gaaaactcctgaattattatttgatgtgttgctatttttaacctactgctctgtgacaaa 390
Query: 368 gtcccaagttgctgggtggtggtggtgatggggtagtggtgtcaattcacactgaaggag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtcccaagttgctgggtggtggtggtgatggggtagtggtgtcaattcacactgaaggag 330
Query: 428 aacaaagattctgagagagctgacccttaaaaacagctccgcaggctactcatttgtcat 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacaaagattctgagagagctgacccttaaaaacagctccgcaggctactcatttgtcac 270
Query: 488 ggctgtatccctctcaccccaccctctggggttccgatgtcacacttacttccagattaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggctgtatccctctcaccccaccctctggggttccgatgtcacacttacttccagattaa 210
Query: 548 ta 549
||
Sbjct: 209 ta 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_d24.g1 MSMg01no416_d24.g1 CHROMAT_FILE:
MSMg01no416_d24.g1 PHD_FILE: MSMg01no416_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:50 2005
(530 letters)
>mm_chr10_93954052_93954977
Length = 926
Score = 928 bits (480), Expect = 0.0
Identities = 516/530 (97%), Gaps = 4/530 (0%)
Strand = Plus / Plus
Query: 1 cttgtcctgctttaaactcctctctgctggaattacaagcctatatatacacctgcacag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 201 cttgtcctgctttaaactcctctctgctggaattacaagcc----tatacacctgcgcag 256
Query: 61 catggcattgttaggcaagggttaaactctttttataatcttgagttaatcgtgaagtgt 120
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 257 catggcattgttaggcaagggttgaactctttttataatcttgagtcaatcgtgaagtgt 316
Query: 121 tggtgtggctaacccaggcacctcccaggctgtgtttctatcataactgtcttccagtgc 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggtgtggctaacccaggcaccttccaggctgtgtttctatcataactgtcttccagtgc 376
Query: 181 cagcttcggccacagcacatccttgacacacctcgcacaaaccacttcagtttgtttggt 240
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caccttcggccacagcacgtccttgacacacctcgcacaaaccacttcagtttgtttggt 436
Query: 241 atcatctgattctttccagagccgtgacagagatgattgttacccatcaagggatgctga 300
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 437 atcatctgattctttccagagccgtgactgagatgactgttacccatcaagggatgctga 496
Query: 301 cacaaagacaggtaaactatataaggcaaccaagccaagcatcagccaggccatgggctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacaaagacaggtaaactatataaggcaaccaagccaagcatcagccaggccatgggctt 556
Query: 361 ctgggagtgggcctctttactgcaccaccgtctctcagttttgttttaagatacacttta 420
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgtgagtgggcctctttactgtaccaccgtctctcagttttgttttaagatacacttta 616
Query: 421 taacccagactgacctgaaactcataattctcctgcctcagcctccctagtgctggaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taacccagactgacctgaaactcataattctcctgcctcagcctccctagtgctggaatg 676
Query: 481 tgtaggcacgtgtgaccatacctggcttttgactcaatttggaaagccca 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtaggcacgtgtgaccatacctggcttttgactcaatttggaaagccca 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 926
Length adjustment: 10
Effective length of query: 520
Effective length of database: 916
Effective search space: 476320
Effective search space used: 476320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
