Query= MSMg01no416_h11.b1 MSMg01no416_h11.b1 CHROMAT_FILE:
MSMg01no416_h11.b1 PHD_FILE: MSMg01no416_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:05 2005
(573 letters)
>mm_chr10_94957969_94958943
Length = 975
Score = 600 bits (310), Expect = e-175
Identities = 365/388 (94%), Gaps = 12/388 (3%)
Strand = Plus / Minus
Query: 195 cctccagaagagggagtcagatcttgttacagatggttgtgagccaccatgtggttgctg 254
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 cctccagaagaggctgtcagatcttgttacagatggttgtgagccaccatgtggttgctg 916
Query: 255 ggatttgaactcaggaccttcggaagagcagtcaagtgttcttacctgctgagccatctc 314
||||||||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||
Sbjct: 915 ggatttgaactcaggaccttcggaagagcagtcgagtgctcttacccgcagagtcatctc 856
Query: 315 accag-tcccaatatattttcataaatcatgtaggttttattgcaaattgtagtaaataa 373
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 accagct-ccaatatattttcataaatcatgtaggttttattgcaaattgtagtaaataa 797
Query: 374 ataaaaaaataaa----taaacagaccaacaaaacaaaacaaa----aaaaagccaaaaa 425
||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct: 796 ataaaaaaataaacaaataaacagaccaacaaaacaaaaaaaaccccaaaaagccaaaaa 737
Query: 426 ccaaaaccagcccagctagactcaaactctctacatagttgagtctggccttggattcct 485
||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||
Sbjct: 736 ccaaaaccagcccagctagacccaaactct--acatagttgcgtctggccttgggttcct 679
Query: 486 gttctctcctcccagagcttatatatgtgctaccatgcccagcatttcttatattttctt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gttctctcctcccagagcttatatatgtgctaccatgcccagcatttcttatattttctt 619
Query: 546 ttaaatgtattttgtgtgggggtatttt 573
||||||||||||||||||||||||||||
Sbjct: 618 ttaaatgtattttgtgtgggggtatttt 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 975
Length adjustment: 10
Effective length of query: 563
Effective length of database: 965
Effective search space: 543295
Effective search space used: 543295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_h11.g1 MSMg01no416_h11.g1 CHROMAT_FILE:
MSMg01no416_h11.g1 PHD_FILE: MSMg01no416_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:06 2005
(496 letters)
>mm_chr10_94806139_94807036
Length = 898
Score = 893 bits (462), Expect = 0.0
Identities = 488/504 (96%), Gaps = 14/504 (2%)
Strand = Plus / Plus
Query: 1 acataaaacacttcggtgccaggcacataggaaatcaccagtaatgagtgtattgtttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataaaacacttcggtgccaggcacataggaaatcaccagtaatgagtgtattgtttta 260
Query: 61 ttattgttaacaaggtttttattgaattatgttcaggtggtgaaacaattccccagatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattgttaacaaggtttttattgaattatgttcaggtggtgaaacaattccccagatag 320
Query: 121 caacaacactgcttgagatgattaaaatgtaacccaag--aacttggttaatagagtgtt 178
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caacaacactgcttgagatgattaaaatgtaacccaagaaaacttggttaatagagtgtt 380
Query: 179 taaaaactccatctccagctgtgtgtggtggtgtacacctttaaccccagcactggggtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaactccatctccagctgtgtgtggtggtgtacacctttaaccccagcactggggtg 440
Query: 239 cagcagca------tttttttctctaagacttttcggccagtctgctctacataaagaaa 292
|||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cagcagcaggccgg------tctctaagacttttcggccaggctgctctacataaagaaa 494
Query: 293 ccttccaaaacaaatgaacgccttccatctctaggcatggaaactggagaatattctttc 352
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccttccaaaacaaatgaacgccctccatctctaggcatggaaactggagaatattctttc 554
Query: 353 atgctcacaagatacattgtgatttaagtaaaaatggcccccatagcctcgtatgttcga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgctcacaagatacattgtgatttaagtaaaaatggcccccatagcctcgtatgttcga 614
Query: 413 atgcttggatcccagttggtggaactgtttgggaaggattaggggcatgtgcttgtggga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atgcttggatcccagttggtggaactgtttgggaaggattaggggcatgtgcttgtggga 674
Query: 473 ggagttgtgtcacaggacatgggt 496
||||||||||||||||||||||||
Sbjct: 675 ggagttgtgtcacaggacatgggt 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
