BAC Information

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BAC

Clone NameMSMg01-416J04
Chromosome10 (Build37)
Map Location 20,157,350 - 20,371,458
singlet/doubletdoublet
Overlap genePde7b
Upstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416J04.T7 (MSMg01no416_j04.b1)MSMg01-416J04.TJ (MSMg01no416_j04.g1)
ACCAG512358AG512359
length709728
length of high quality
(start - end)		559 (18 - 576)509 (58 - 566)
definitionCHROMAT_FILE: MSMg01no416_j04.b1 PHD_FILE: MSMg01no416_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:14 2005CHROMAT_FILE: MSMg01no416_j04.g1 PHD_FILE: MSMg01no416_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,370,907 - 20,371,458)(20,157,350 - 20,157,858)
sequence
CTCACTATATCCAGAGGATCCGCGGAATTCTCTGTTTATCCGATCCCCAT
TTTTTGGATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCCTGAGTTCTT
TGTATATATTGGATATTAGCCCTCTGTCAGATGTAGGGTTGGTAAAGATC
TTTTCCCAATCTATTGGTTGTCGTTTTGTCCTATTGACAGTGTCCTTTGC
CTTGCAGAAGCTTTGCAATTCAGTCTTAAGTTTTAACTGGGGCTTTCCAA
GAAAAGATTTGGAACACTGGGTCGGTTTCTGCATTTTCCATACAAAGTCT
GAGGTAGAGCACTCAGTTGTAGGGACAAGTCTGGAGGGCAGAATATGTTC
TTACTGAAATAGACTGAGGAAACAAAGTGATCTTGTGAGTTCATAGTCTT
CCCATCTCGGTATGTCTTTGGCTCCTGTCTTTTAGGTAGAAGGAGACATC
TTGTATATGAGTCTACCATGGTGTGCTTCACAGAATGGTCATAAAAATCC
CCTGCCCCCATGTTATGACCACAGGGCAAGGTAGCATGGGAAGGTTAGCA
GGTGTTTCTGCTAATGGCTTGTCTCAAGTGCTCAGGACTCGTATTTTTGG
ACTAGCATATCATCAACCAAGTCAAACCATGAGCATCACTGCTACTGTAC
ACCACGCTCTGCGTGCTCTGTGTCCTTCCTAGGTTACTTCAAATGCCTTC
ACACGTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGGTCACACTGTCACATGACAAGTGTGGTTTGAACCGGAAAT
GTACTAAATGGCAGAGGCAAGCAACCCGGTGACTAGGAATCTATTTTGGA
GAATTCATATGAGGAGATAAGAAAATTCACAGAACCAAAGAGGAACTGGG
CTGCTTTTAGAGAAAGACCCATGGCTGCGGTGGTGGCGTGTGTAAAGATG
GCGGGCTTTGACCTGCGTGTGACTTGAGGTCTATCGCTTACTAGTCATTA
GCCTTGGGAAAGTAGTGAAACCTCTTGGTTGTCCTTTATAACTGGAACAA
GTGGTGATAATAATGTCCAGCTTGTGGATTTCTTCAAACAATTAGAAGTT
ATTTACCTAAAGTGTTCCGCCCACAGTGGTGGAATGTAAACTGTCATTAA
TAATTCATTTTAAGGATTTTCAGCAAATTGTGTTGTGATCATCATTATCT
CGTTGGGATTCTATTAGTATAAGAGCATGTCAGAATTGTCTGGACACCTA
TATACCCTTGGTGGTCTTTTTATAGATGCCGGGTGTATTGAAGCATAACA
CATTAAGCTAACAACTCATCAATGACTTAAGACCCGATAATTATCGTTAA
AAAGGAAGATTAAATCTATTTAGATTAATTTGAGGTCTTTTTTTTTAAAT
CCTGGTGGGGGTTAAACTTTTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_j04.b1 MSMg01no416_j04.b1 CHROMAT_FILE:
MSMg01no416_j04.b1 PHD_FILE: MSMg01no416_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:14 2005
         (559 letters)



>mm_chr10_20370504_20371462
          Length = 959

 Score = 1006 bits (520), Expect = 0.0
 Identities = 544/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctctgtttatccgatccccattttttggatagggttatttggttctctggagtct 67
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 955 gaattctctgtttagctgatccccattttttggatagggttatttggttctctggggtct 896

                                                                       
Query: 68  aacttcctgagttctttgtatatattggatattagccctctgtcagatgtagggttggta 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 895 aacttcctgagttctttgtatatattggatattagccctctgtcagatgtagagttggta 836

                                                                       
Query: 128 aagatcttttcccaatctattggttgtcgttttgtcctattgacagtgtcctttgccttg 187
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 835 aagatcttttcccaatctattggttgtcgttttgtcctattgactgtgttctttgccttg 776

                                                                       
Query: 188 cagaagctttgcaattcagtcttaagttttaactggggctttccaagaaaagatttggaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cagaagctttgcaattcagtcttaagttttaactggggctttccaagaaaagatttggaa 716

                                                                       
Query: 248 cactgggtcggtttctgcattttccatacaaagtctgaggtagagcactcagttgtaggg 307
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 715 cactgggtcggtttctgcattttccatacaaggtctgaggtagagcactcagttgtaggg 656

                                                                       
Query: 308 acaagtctggagggcagaatatgttcttactgaaatagactgaggaaacaaagtgatctt 367
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 acaagcctggagggcagaatatgttcttactgaaatagactgaggaaacaaagtgatctt 596

                                                                       
Query: 368 gtgagttcatagtcttcccatctcggtatgtctttggctcctgtcttttaggtagaagga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgagttcatagtcttcccatctcggtatgtctttggctcctgtcttttaggtagaagga 536

                                                                       
Query: 428 gacatcttgtatatgagtctaccatggtgtgcttcacagaatggtcataaaaatcccctg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gacatcttgtatatgagtctaccatggtgtgcttcacagaatggtcataaaaatcccctg 476

                                                                       
Query: 488 cccccatgttatgaccacagggcaaggtagcatgggaaggttagcaggtgtttctgctaa 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cccccatgttatgaccacagggcaaggtagcatgggaaggttagcaggtgtttctgctaa 416

                       
Query: 548 tggcttgtctca 559
           ||||||||||||
Sbjct: 415 tggcttgtctca 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_j04.g1 MSMg01no416_j04.g1 CHROMAT_FILE:
MSMg01no416_j04.g1 PHD_FILE: MSMg01no416_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:14 2005
         (509 letters)



>mm_chr10_20157150_20158058
          Length = 909

 Score =  930 bits (481), Expect = 0.0
 Identities = 502/509 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtcacactgtcacatgacaagtgtggtttgaaccggaaatgtactaaatggcagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtcacactgtcacatgacaagtgtggtttgaaccggaaatgtactaaatggcagagg 260

                                                                       
Query: 61  caagcaacccggtgactaggaatctattttggagaattcatatgaggagataagaaaatt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcaacccagtgactaggaatctattttggagaattcatatgaggagataagaaaatt 320

                                                                       
Query: 121 cacagaaccaaagaggaactgggctgcttttagagaaagacccatggctgcggtggtggc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cacagaaccaaagaggaactgggctgcttttagagaaagacccgtggctgcggtggtggc 380

                                                                       
Query: 181 gtgtgtaaagatggcgggctttgacctgcgtgtgacttgaggtctatcgcttactagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtaaagatggcgggctttgacctgcgtgtgacttgaggtctatcgcttactagtca 440

                                                                       
Query: 241 ttagccttgggaaagtagtgaaacctcttggttgtcctttataactggaacaagtggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagccttgggaaagtagtgaaacctcttggttgtcctttataactggaacaagtggtga 500

                                                                       
Query: 301 taataatgtccagcttgtggatttcttcaaacaattagaagttatttacctaaagtgttc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 taataatgtccagcttgtggatttcttcaaacaattagaagtcatttacctaaagtgttc 560

                                                                       
Query: 361 cgcccacagtggtggaatgtaaactgtcattaataattcattttaaggattttcagcaaa 420
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cacccacagtggtggaatgtaaactgtcgttaataattcattttaaggattttcagcaaa 620

                                                                       
Query: 421 ttgtgttgtgatcatcattatctcgttgggattctattagtataagagcatgtcagaatt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtgttgtgatcatcattatctcattgggattctattagtataagagcatgtcagaatt 680

                                        
Query: 481 gtctggacacctatatacccttggtggtc 509
           |||| ||||||||||||||||||||||||
Sbjct: 681 gtcttgacacctatatacccttggtggtc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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